Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26000 - ( zinc finger (C3HC4-type RING finger) family protein )

15 Proteins interacs with AT2G26000
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07770

Predicted

two hybrid

two hybrid

FSW = 0.0274

Unknown

RPS15A (RIBOSOMAL PROTEIN S15A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0043

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G06530

Predicted

interologs mapping

Co-purification

FSW = 0.1185

Unknown

VPS21
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0066

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G18800

Predicted

interologs mapping

FSW = 0.0147

Unknown

ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING
AT3G54826

Predicted

Affinity Capture-MS

FSW = 0.1015

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S ZINC FINGER ZIM17-TYPE (INTERPROIPR007853) HAS 284 BLAST HITS TO 284 PROTEINS IN 134 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 100 FUNGI - 79 PLANTS - 58 VIRUSES - 0 OTHER EUKARYOTES - 47 (SOURCE NCBI BLINK)
AT1G62800

Predicted

Synthetic Rescue

FSW = 0.0416

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT5G59850Predicted

two hybrid

FSW = 0.0351

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AF)
AT1G60940

Predicted

synthetic growth defect

FSW = 0.1111

Unknown

SNRK210 (SNF1-RELATED PROTEIN KINASE 210) KINASE
AT5G11920

Predicted

Affinity Capture-Western

Affinity Capture-Western

Synthetic Lethality

FSW = 0.0902

Unknown

ATCWINV6 (6-&1-FRUCTAN EXOHYDROLASE) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / INULINASE/ LEVANASE
AT2G31510

Predicted

Affinity Capture-MS

FSW = 0.0832

Unknown

IBR DOMAIN-CONTAINING PROTEIN / ARIADNE-LIKE PROTEIN ARI7 (ARI7)
AT2G40110

Predicted

Affinity Capture-MS

FSW = 0.1524

Unknown

YIPPEE FAMILY PROTEIN
AT1G05890

Predicted

Affinity Capture-MS

FSW = 0.0988

Unknown

ZINC FINGER PROTEIN-RELATED
AT4G27740

Predicted

Affinity Capture-MS

FSW = 0.1184

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YIPPEE-LIKE PROTEIN (INTERPROIPR004910) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G277451) HAS 684 BLAST HITS TO 682 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 389 FUNGI - 132 PLANTS - 111 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK)
AT2G42160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0677

Unknown

ZINC FINGER (UBIQUITIN-HYDROLASE) DOMAIN-CONTAINING PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454