Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26150 - ( ATHSFA2 DNA binding / transcription factor )

28 Proteins interacs with AT2G26150
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G16820

Experimental

protein complementation assay

two hybrid

FSW = 0.0422

Class A:

nucleus

Class D:

nucleus (p = 0.78)

HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR
AT4G17750

Experimental

protein complementation assay

two hybrid

FSW = 0.0970

Class A:

nucleus

Class D:

nucleus (p = 0.78)

HSF1 (HEAT SHOCK FACTOR 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G52640

Experimental

FSW = 0.0194

Class B:

plasma membrane

nucleus

cytosol

Class D:

nucleus (p = 0.78)

cytosol (p = 0.67)

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G25230

Experimental

FSW = 0.0221

Unknown

ROF1 (ROTAMASE FKBP 1) FK506 BINDING / CALMODULIN BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G15802

Experimental

two hybrid

FSW = 0.1048

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S HEAT SHOCK FACTOR BINDING 1 (INTERPROIPR009643) HAS 178 BLAST HITS TO 178 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 122 FUNGI - 0 PLANTS - 37 VIRUSES - 0 OTHER EUKARYOTES - 19 (SOURCE NCBI BLINK)
AT5G22750

Predicted

synthetic growth defect

FSW = 0.2775

Class C:

nucleus

RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G18880

Predicted

Affinity Capture-Western

interologs mapping

Phenotypic Enhancement

FSW = 0.0441

Class C:

nucleus

AT-HSFA4A DNA BINDING / TRANSCRIPTION FACTOR
AT3G19210

Predicted

synthetic growth defect

FSW = 0.1533

Class C:

nucleus

ATRAD54 (ARABIDOPSIS HOMOLOG OF RAD54) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G45710

Predicted

Gene fusion method

Co-expression

FSW = 0.0737

Class C:

nucleus

RHA1 (ROOT HANDEDNESS 1) DNA BINDING / TRANSCRIPTION FACTOR
AT1G07890

Predicted

Phenotypic Suppression

Shared biological function

Co-expression

FSW = 0.0188

Unknown

APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT3G11630

Predicted

Synthetic Lethality

FSW = 0.1060

Unknown

2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT5G49030

Predicted

Phenotypic Enhancement

FSW = 0.0129

Unknown

OVA2 (OVULE ABORTION 2) ATP BINDING / AMINOACYL-TRNA LIGASE/ CATALYTIC/ ISOLEUCINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT1G20090

Predicted

interologs mapping

Synthetic Rescue

FSW = 0.0168

Unknown

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT2G31970

Predicted

synthetic growth defect

FSW = 0.1032

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G57450

Predicted

synthetic growth defect

FSW = 0.1236

Unknown

XRCC3 ATP BINDING / DAMAGED DNA BINDING / PROTEIN BINDING / SINGLE-STRANDED DNA BINDING
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0044

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT5G54260

Predicted

synthetic growth defect

FSW = 0.1124

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G20850

Predicted

synthetic growth defect

FSW = 0.0864

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT1G27320

Predicted

biochemical

biochemical

biochemical

Synthetic Lethality

Synthetic Rescue

FSW = 0.0204

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT2G45000

Predicted

Phenotypic Suppression

FSW = 0.0510

Unknown

EMB2766 (EMBRYO DEFECTIVE 2766) STRUCTURAL CONSTITUENT OF NUCLEAR PORE
AT1G69680

Predicted

Reconstituted Complex

FSW = 0.1401

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK)
AT5G26680

Predicted

synthetic growth defect

FSW = 0.1257

Unknown

ENDONUCLEASE PUTATIVE
AT4G30870

Predicted

synthetic growth defect

FSW = 0.1344

Unknown

MUS81 (MMS AND UV SENSITIVE 81) ENDONUCLEASE/ NUCLEIC ACID BINDING
AT3G42660

Predicted

synthetic growth defect

FSW = 0.1328

Unknown

NUCLEOTIDE BINDING
AT1G66740

Predicted

synthetic growth defect

FSW = 0.0965

Unknown

SGA2
AT1G14400

Predicted

synthetic growth defect

FSW = 0.1059

Unknown

UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE
AT1G04730Predicted

synthetic growth defect

FSW = 0.1270

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G43900

Predicted

Synthetic Lethality

FSW = 0.1131

Unknown

PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454