Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26350 - ( PEX10 protein binding / zinc ion binding )

12 Proteins interacs with AT2G26350
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G03490

Experimental

pull down

FSW = 0.1943

Class A:

peroxisome

Class B:

endoplasmic reticulum

cytosol

Class D:

nucleus (p = 0.78)

 PEX19-1 (PEROXIN 19-1)
AT1G79810

Predicted

Affinity Capture-MS

in vivo

two hybrid

FSW = 0.5556

Class C:

peroxisome

cytosol

 TED3 (REVERSAL OF THE DET PHENOTYPE 3) PROTEIN BINDING / ZINC ION BINDING
AT3G04460

Predicted

two hybrid

two hybrid

two hybrid

in vivo

in vivo

in vitro

in vitro

Co-purification

Affinity Capture-Western

interaction prediction

FSW = 0.3425

Class C:

peroxisome

 PEX12 PROTEIN BINDING / ZINC ION BINDING
AT5G56290

Predicted

in vivo

in vitro

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Co-expression

FSW = 0.3010

Class C:

peroxisome

 PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING
AT1G03000

Predicted

co-fractionation

Co-fractionation

FSW = 0.6125

Class C:

peroxisome

 PEX6 (PEROXIN 6) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G17550

Predicted

in vivo

in vitro

Affinity Capture-MS

two hybrid

FSW = 0.1736

Class C:

peroxisome

 PEX19-2
AT5G08470

Predicted

co-fractionation

Co-fractionation

FSW = 0.3737

Class C:

peroxisome

 PEX1 (PEROXISOME 1) ATP BINDING / ATPASE/ BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0052

Class C:

cytosol

 ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0866

Unknown

 EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0796

Unknown

 GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT2G23420

Predicted

synthetic growth defect

FSW = 0.1875

Unknown

 NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2) NICOTINATE PHOSPHORIBOSYLTRANSFERASE
AT5G25760

Predicted

two hybrid

interaction prediction

Enriched domain pair

Co-expression

FSW = 0.1684

Unknown

 PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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