Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26990 - ( FUS12 (FUSCA 12) )
16 Proteins interacs with AT2G26990Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G42970 | Experimentalco-fractionationCo-fractionationAffinity Capture-Westerntwo hybrid | FSW = 0.3601
| Class D:cytosol (p = 0.67) | COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING |
AT4G02570 | ExperimentalAffinity Capture-Westerntwo hybrid | FSW = 0.0317
| Class D:cytosol (p = 0.67) | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
AT3G61140 | Experimentaltwo hybridtwo hybrid | FSW = 0.4489
| Class D:cytosol (p = 0.67) | FUS6 (FUSCA 6) |
AT5G14250 | Experimentaltwo hybrid | FSW = 0.3200
| Class D:cytosol (p = 0.67) | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT1G71230 | ExperimentalAffinity Capture-Western | FSW = 0.3115
| Unknown | CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING |
AT1G22920 | Experimentalco-fractionationCo-fractionationAffinity Capture-Western | FSW = 0.2159
| Unknown | CSN5A (COP9 SIGNALOSOME 5A) |
AT1G26830 | Experimentaltwo hybridtwo hybrid | FSW = 0.0963
| Unknown | ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G27640 | PredictedAffinity Capture-MS | FSW = 0.1451
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G67450 | Predictedtwo hybrid | FSW = 0.0426
| Unknown | AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) DNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR/ ZINC ION BINDING |
AT5G55580 | Predictedtwo hybrid | FSW = 0.0381
| Unknown | MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN / MTERF FAMILY PROTEIN |
AT4G14605 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHODRIAL TRANSCRIPTION TERMINATION FACTOR-RELATED (INTERPROIPR003690) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EMB2219 (EMBRYO DEFECTIVE 2219) (TAIRAT2G217101) HAS 760 BLAST HITS TO 374 PROTEINS IN 45 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 99 FUNGI - 0 PLANTS - 624 VIRUSES - 0 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK) |
AT2G44020 | Predictedtwo hybridCo-expression | FSW = 0.1684
| Unknown | MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR-RELATED / MTERF-RELATED |
AT1G02090 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.2722
| Unknown | FUS5 (FUSCA 5) MAP KINASE KINASE |
AT5G58575 | Predictedtwo hybridtwo hybrid | FSW = 0.0401
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT5G07590 | PredictedAffinity Capture-MS | FSW = 0.1377
| Unknown | WD-40 REPEAT PROTEIN FAMILY |
AT4G11330 | Predictedin vivo | FSW = 0.0184
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454