Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G26990 - ( FUS12 (FUSCA 12) )

16 Proteins interacs with AT2G26990
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G42970

Experimental

co-fractionation

Co-fractionation

Affinity Capture-Western

two hybrid

FSW = 0.3601

Class D:

cytosol (p = 0.67)

COP8 (CONSTITUTIVE PHOTOMORPHOGENIC 8) PROTEIN BINDING
AT4G02570

Experimental

Affinity Capture-Western

two hybrid

FSW = 0.0317

Class D:

cytosol (p = 0.67)

ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING
AT3G61140

Experimental

two hybrid

two hybrid

FSW = 0.4489

Class D:

cytosol (p = 0.67)

FUS6 (FUSCA 6)
AT5G14250

Experimental

two hybrid

FSW = 0.3200

Class D:

cytosol (p = 0.67)

COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING
AT1G71230

Experimental

Affinity Capture-Western

FSW = 0.3115

Unknown

CSN5B (COP9-SIGNALOSOME 5B) PROTEIN BINDING
AT1G22920

Experimental

co-fractionation

Co-fractionation

Affinity Capture-Western

FSW = 0.2159

Unknown

CSN5A (COP9 SIGNALOSOME 5A)
AT1G26830

Experimental

two hybrid

two hybrid

FSW = 0.0963

Unknown

ATCUL3 (ARABIDOPSIS THALIANA CULLIN 3) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G27640

Predicted

Affinity Capture-MS

FSW = 0.1451

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G67450

Predicted

two hybrid

FSW = 0.0426

Unknown

AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1) DNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR/ ZINC ION BINDING
AT5G55580

Predicted

two hybrid

FSW = 0.0381

Unknown

MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN / MTERF FAMILY PROTEIN
AT4G14605

Predicted

two hybrid

FSW = 0.0368

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHODRIAL TRANSCRIPTION TERMINATION FACTOR-RELATED (INTERPROIPR003690) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EMB2219 (EMBRYO DEFECTIVE 2219) (TAIRAT2G217101) HAS 760 BLAST HITS TO 374 PROTEINS IN 45 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 99 FUNGI - 0 PLANTS - 624 VIRUSES - 0 OTHER EUKARYOTES - 37 (SOURCE NCBI BLINK)
AT2G44020

Predicted

two hybrid

Co-expression

FSW = 0.1684

Unknown

MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR-RELATED / MTERF-RELATED
AT1G02090

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.2722

Unknown

FUS5 (FUSCA 5) MAP KINASE KINASE
AT5G58575

Predicted

two hybrid

two hybrid

FSW = 0.0401

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT5G07590

Predicted

Affinity Capture-MS

FSW = 0.1377

Unknown

WD-40 REPEAT PROTEIN FAMILY
AT4G11330

Predicted

in vivo

FSW = 0.0184

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454