Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G27020 - ( PAG1 endopeptidase/ peptidase/ threonine-type endopeptidase )
43 Proteins interacs with AT2G27020Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G25490 | Experimentalbiochemical | FSW = 0.3167
| Class D:cytosol (p = 0.67) | EBF1 (EIN3-BINDING F BOX PROTEIN 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G21720 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.4449
| Class C:vacuole | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G51260 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5620
| Class C:vacuole | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G66140 | PredictedPhylogenetic profile method | FSW = 0.4622
| Class C:vacuole | PAD2 (PROTEASOME ALPHA SUBUNIT D 2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2794
| Class C:vacuole | PBD1 (20S PROTEASOME BETA SUBUNIT D1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.6039
| Class C:vacuole | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninteraction predictionCo-expression | FSW = 0.2724
| Class C:vacuole | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5554
| Class C:vacuole | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0052
| Class C:vacuole | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G35590 | Predictedtwo hybridin vitroAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionPhylogenetic profile method | FSW = 0.5661
| Class C:vacuole | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.1937
| Class C:vacuole | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G45000 | Predictedtwo hybridCo-expression | FSW = 0.1452
| Class C:nucleus | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT3G60820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5199
| Unknown | PBF1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G17745 | Predictedinteraction predictiontwo hybrid | FSW = 0.0067
| Unknown | PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE) PHOSPHOGLYCERATE DEHYDROGENASE |
AT2G20580 | PredictedCo-purification | FSW = 0.0972
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G47250 | Predictedtwo hybridtwo hybridAffinity Capture-MSin vitroAffinity Capture-MStwo hybridPhylogenetic profile methodCo-expression | FSW = 0.5238
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G42500 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.2626
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G10430 | PredictedAffinity Capture-MS | FSW = 0.2246
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G42790 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridtwo hybridtwo hybridin vitroAffinity Capture-MSinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.5513
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.1797
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G20200 | PredictedAffinity Capture-MSCo-expression | FSW = 0.1517
| Unknown | EMB2719 (EMBRYO DEFECTIVE 2719) ENZYME REGULATOR |
AT3G10920 | PredictedAffinity Capture-MS | FSW = 0.0127
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT1G13060 | PredictedCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4386
| Unknown | PBE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G16470 | PredictedAffinity Capture-MSAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.5365
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290 | Predictedinteraction predictionPhylogenetic profile methodCo-expression | FSW = 0.3543
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridGene neighbors methodPhylogenetic profile method | FSW = 0.3761
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G43010 | Predictedtwo hybrid | FSW = 0.1714
| Unknown | RPT4A ATPASE |
AT5G12410 | Predictedtwo hybrid | FSW = 0.1072
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT4G19006 | PredictedAffinity Capture-MS | FSW = 0.2211
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0333
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G51720 | PredictedAffinity Capture-MS | FSW = 0.0435
| Unknown | GLUTAMATE DEHYDROGENASE PUTATIVE |
AT1G54290 | Predictedtwo hybridinteraction prediction | FSW = 0.0316
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT1G56450 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.5013
| Unknown | PBG1 PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G79210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhylogenetic profile method | FSW = 0.3227
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
AT1G79990 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0088
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT3G13330 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2585
| Unknown | BINDING |
AT5G19820 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0341
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
AT5G40580 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4512
| Unknown | PBB2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G15770 | Predictedtwo hybridinterologs mappinginteraction prediction | FSW = 0.0351
| Unknown | ATGNA1 (ARABIDOPSIS THALIANA GLUCOSE-6-PHOSPHATE ACETYLTRANSFERASE 1) N-ACETYLTRANSFERASE/ GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
AT1G75660 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0124
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
AT3G27430 | PredictedAffinity Capture-MSCo-expression | FSW = 0.4741
| Unknown | PBB1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G52360 | PredictedAffinity Capture-MS | FSW = 0.0099
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
AT1G26610 | Predictedtwo hybrid | FSW = 0.0870
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454