Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G27170 - ( TTN7 (TITAN7) ATP binding / protein binding )
48 Proteins interacs with AT2G27170Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedReconstituted Complex | FSW = 0.0192
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT4G16660 | Predictedtwo hybrid | FSW = 0.0191
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT1G56070 | PredictedAffinity Capture-MS | FSW = 0.0170
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT1G61000 | Predictedinteraction predictiontwo hybrid | FSW = 0.0793
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN MITOSIS LOCATED IN PLASMA MEMBRANE EXPRESSED IN CULTURED CELL CONTAINS INTERPRO DOMAIN/S KINETOCHORE PROTEIN NUF2 (INTERPROIPR005549) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MYOSIN HEAVY CHAIN-RELATED (TAIRAT1G643301) HAS 41010 BLAST HITS TO 23184 PROTEINS IN 1264 SPECIES ARCHAE - 616 BACTERIA - 3998 METAZOA - 20566 FUNGI - 2893 PLANTS - 1316 VIRUSES - 149 OTHER EUKARYOTES - 11472 (SOURCE NCBI BLINK) |
AT3G49010 | PredictedAffinity Capture-MS | FSW = 0.0235
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G43170 | PredictedAffinity Capture-MS | FSW = 0.0117
| Unknown | ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G64790 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0276
| Unknown | BINDING |
AT3G62870 | Predictedtwo hybrid | FSW = 0.0145
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G67630 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0412
| Unknown | DNA HELICASE PUTATIVE |
AT1G19660 | Predictedinterologs mapping | FSW = 0.0254
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G24360 | Predictedco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.0261
| Unknown | 3-OXOACYL-(ACYL-CARRIER PROTEIN) REDUCTASE CHLOROPLAST / 3-KETOACYL-ACYL CARRIER PROTEIN REDUCTASE |
AT3G54670 | Predictedinteraction predictiontwo hybridReconstituted Complexin vivoCo-purificationCo-purificationColocalizationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSfluorescence acceptor donor pairfluorescence acceptor donor pairtwo hybridco-fractionationCo-fractionationinterologs mappingin vivointeraction predictionCo-expression | FSW = 0.1244
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0476
| Unknown | DNA HELICASE-RELATED |
AT2G45710 | Predictedinterologs mapping | FSW = 0.0483
| Unknown | 40S RIBOSOMAL PROTEIN S27 (RPS27A) |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0378
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G52640 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0299
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G58800 | PredictedAffinity Capture-Westerntwo hybridtwo hybrid | FSW = 0.0192
| Unknown | QUINONE REDUCTASE FAMILY PROTEIN |
AT5G26340 | Predictedtwo hybridPhenotypic SuppressionAffinity Capture-Westerntwo hybrid | FSW = 0.0345
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G69850 | Predictedtwo hybrid | FSW = 0.0366
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
AT3G23310 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | PROTEIN KINASE PUTATIVE |
AT5G02490 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0073
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT4G39160 | PredictedCo-purification | FSW = 0.0557
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0071
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G21190 | Predictedinterologs mappinginterologs mappingAffinity Capture-Westernco-fractionationCo-fractionationinterologs mappingCo-purification | FSW = 0.0761
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT5G18620 | PredictedCo-purification | FSW = 0.0325
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT2G44950 | Predictedtwo hybridinteraction prediction | FSW = 0.0269
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT2G14610 | Predictedinterologs mapping | FSW = 0.0452
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT5G05490 | PredictedAffinity Capture-Western | FSW = 0.0690
| Unknown | SYN1 (SYNAPTIC 1) |
AT3G59550 | Predictedinterologs mappinginteraction predictionEnriched domain pairCo-expression | FSW = 0.0989
| Unknown | SYN3 |
AT1G61580 | PredictedAffinity Capture-MS | FSW = 0.0133
| Unknown | RPL3B (R-PROTEIN L3 B) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G07880 | Predictedtwo hybrid | FSW = 0.0198
| Unknown | ATMPK13 MAP KINASE/ KINASE |
AT1G49520 | PredictedCo-purification | FSW = 0.0213
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT1G56090 | Predictedinterologs mapping | FSW = 0.0575
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0791
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT2G46070 | PredictedAffinity Capture-Western | FSW = 0.0315
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G03110 | Predictedtwo hybrid | FSW = 0.0231
| Unknown | XPO1B BINDING / PROTEIN TRANSPORTER |
AT3G03340 | Predictedinteraction predictiontwo hybrid | FSW = 0.0138
| Unknown | UNE6 (UNFERTILIZED EMBRYO SAC 6) |
AT5G15540 | PredictedAffinity Capture-Western | FSW = 0.0575
| Unknown | EMB2773 (EMBRYO DEFECTIVE 2773) BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT3G03960 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0366
| Unknown | CHAPERONIN PUTATIVE |
AT3G46320 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | HISTONE H4 |
AT3G47460 | Predictedinteraction predictiontwo hybridCo-expression | FSW = 0.1321
| Unknown | ATSMC2 TRANSPORTER |
AT5G46840 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0309
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G48600 | Predictedtwo hybridinteraction prediction | FSW = 0.0604
| Unknown | ATSMC3 (ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 3) ATP BINDING / TRANSPORTER |
AT5G16270 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternColocalizationEnriched domain pairCo-expression | FSW = 0.0366
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
AT1G29965 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
AT1G55255 | Predictedtwo hybrid | FSW = 0.0327
| Unknown | 60S RIBOSOMAL PROTEIN L18A (RPL18AA) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454