Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G27470 - ( NF-YB11 (NUCLEAR FACTOR Y SUBUNIT B11) transcription factor )
44 Proteins interacs with AT2G27470Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G59690 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.1843
| Class C:nucleus | HISTONE H4 |
AT5G19310 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0831
| Class C:nucleus | HOMEOTIC GENE REGULATOR PUTATIVE |
AT1G07980 | PredictedAffinity Capture-MSAffinity Capture-WesternReconstituted Complexin vivo | FSW = 0.1451
| Class C:nucleus | NF-YC10 (NUCLEAR FACTOR Y SUBUNIT C10) TRANSCRIPTION FACTOR |
AT3G12480 | Predictedtwo hybrid | FSW = 0.0319
| Class C:nucleus | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G08190 | Predictedtwo hybrid | FSW = 0.0395
| Class C:nucleus | NF-YB12 (NUCLEAR FACTOR Y SUBUNIT B12) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G22220 | PredictedPhenotypic Enhancement | FSW = 0.0062
| Class C:nucleus | E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT5G44200 | PredictedSynthetic LethalityCo-expression | FSW = 0.0400
| Class C:nucleus | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
AT2G47620 | PredictedPhenotypic Enhancement | FSW = 0.1339
| Class C:nucleus | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT5G08630 | PredictedAffinity Capture-Western | FSW = 0.2058
| Class C:nucleus | DDT DOMAIN-CONTAINING PROTEIN |
AT1G65470 | PredictedReconstituted ComplexCo-expression | FSW = 0.2055
| Class C:nucleus | FAS1 (FASCIATA 1) HISTONE BINDING |
AT5G64630 | PredictedAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.1554
| Class C:nucleus | FAS2 (FASCIATA 2) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G18620 | PredictedAffinity Capture-WesternCo-purification | FSW = 0.0984
| Class C:nucleus | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
AT2G06210 | PredictedPhenotypic Enhancement | FSW = 0.0779
| Class C:nucleus | ELF8 (EARLY FLOWERING 8) BINDING |
AT4G29130 | PredictedAffinity Capture-MS | FSW = 0.0408
| Unknown | HXK1 (HEXOKINASE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT1G07660 | PredictedAffinity Capture-MSAffinity Capture-WesternReconstituted Complex | FSW = 0.0777
| Unknown | HISTONE H4 |
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0498
| Unknown | BINDING |
AT1G50460 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | HKL1 (HEXOKINASE-LIKE 1) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G02520 | PredictedPhenotypic Suppression | FSW = 0.1189
| Unknown | GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0416
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT3G10050 | PredictedPhenotypic Enhancement | FSW = 0.0183
| Unknown | OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE |
AT3G12110 | PredictedPhenotypic Enhancement | FSW = 0.0208
| Unknown | ACT11 (ACTIN-11) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G11890 | PredictedPhenotypic Enhancement | FSW = 0.0904
| Unknown | SEC22 TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0308
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G66130 | PredictedAffinity Capture-Western | FSW = 0.0619
| Unknown | ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) |
AT3G28730 | PredictedPhenotypic Enhancement | FSW = 0.1329
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT5G16680 | PredictedAffinity Capture-Western | FSW = 0.0406
| Unknown | PHD FINGER FAMILY PROTEIN |
AT1G05910 | PredictedPhenotypic Suppression | FSW = 0.1108
| Unknown | CELL DIVISION CYCLE PROTEIN 48-RELATED / CDC48-RELATED |
AT1G04730 | Predictedsynthetic growth defectCo-expression | FSW = 0.0640
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G32130 | PredictedPhenotypic Enhancement | FSW = 0.1657
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT2G44580 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0559
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G46320 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-Western | FSW = 0.1531
| Unknown | HISTONE H4 |
AT5G10390 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.2095
| Unknown | HISTONE H3 |
AT5G10400 | PredictedAffinity Capture-MSReconstituted ComplexAffinity Capture-WesternPhenotypic Enhancement | FSW = 0.1883
| Unknown | HISTONE H3 |
AT5G26680 | Predictedsynthetic growth defect | FSW = 0.0833
| Unknown | ENDONUCLEASE PUTATIVE |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.1500
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G63610 | PredictedPhenotypic Suppression | FSW = 0.0414
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G22140 | PredictedPhenotypic Suppression | FSW = 0.1340
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G38630 | PredictedPhenotypic Enhancement | FSW = 0.0540
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.0464
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G10960 | PredictedReconstituted Complex | FSW = 0.0266
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G42000 | PredictedPhenotypic Enhancement | FSW = 0.0769
| Unknown | ORMDL FAMILY PROTEIN |
AT5G46030 | PredictedPhenotypic Enhancement | FSW = 0.1907
| Unknown | UNKNOWN PROTEIN |
AT1G09200 | PredictedAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexCo-expression | FSW = 0.0779
| Unknown | HISTONE H3 |
AT1G15920 | PredictedReconstituted Complex | FSW = 0.0294
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454