Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G27600 - ( SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP binding / nucleoside-triphosphatase/ nucleotide binding )

42 Proteins interacs with AT2G27600
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G19640

Experimental

confocal microscopy

electron microscopy

FSW = 0.0237

Unknown

ARA7 GTP BINDING
AT5G45130

Experimental

confocal microscopy

electron microscopy

FSW = 0.0313

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT3G54840

Experimental

confocal microscopy

electron microscopy

FSW = 0.0120

Unknown

ARA6 GTP BINDING / GTPASE
AT4G26750

Experimental

pull down

Reconstituted Complex

in vitro

FSW = 0.0132

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT5G57630

Experimental

atpase assay

FSW = 0.0216

Unknown

CIPK21 (CBL-INTERACTING PROTEIN KINASE 21) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G76030

Predicted

Synthetic Lethality

FSW = 0.0186

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT1G20260

Predicted

Synthetic Lethality

FSW = 0.0119

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G66680

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0285

Unknown

DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE
AT2G06530

Predicted

far western blotting

Co-crystal Structure

Reconstituted Complex

FSW = 0.1619

Unknown

VPS21
AT5G09260

Predicted

Reconstituted Complex

two hybrid

FSW = 0.1130

Unknown

VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202)
AT1G79940

Predicted

interologs mapping

FSW = 0.0504

Unknown

ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT4G21180

Predicted

Phenotypic Enhancement

FSW = 0.0401

Unknown

ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT4G34580

Predicted

Synthetic Lethality

FSW = 0.0332

Unknown

COW1 (CAN OF WORMS1) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0166

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G19830

Predicted

interaction prediction

two hybrid

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2516

Unknown

SNF72
AT5G45970

Predicted

in vivo

in vitro

two hybrid

FSW = 0.0052

Unknown

ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT1G71820

Predicted

Phenotypic Enhancement

FSW = 0.0089

Unknown

SEC6
AT5G63880

Predicted

Reconstituted Complex

two hybrid

Reconstituted Complex

Reconstituted Complex

two hybrid

interaction prediction

FSW = 0.0754

Unknown

VPS201
AT1G09540

Predicted

Affinity Capture-MS

FSW = 0.0508

Unknown

MYB61 (MYB DOMAIN PROTEIN 61) DNA BINDING / TRANSCRIPTION FACTOR
AT3G48470

Predicted

Phenotypic Enhancement

FSW = 0.0087

Unknown

EMB2423 (EMBRYO DEFECTIVE 2423)
AT1G25420

Predicted

two hybrid

two hybrid

Affinity Capture-MS

Reconstituted Complex

Colocalization

FSW = 0.1153

Unknown

UNKNOWN PROTEIN
AT4G29440

Predicted

two hybrid

FSW = 0.0790

Unknown

UNKNOWN PROTEIN
AT1G15130

Predicted

two hybrid

two hybrid

interaction prediction

FSW = 0.0592

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT1G73030

Predicted

Reconstituted Complex

two hybrid

two hybrid

Affinity Capture-Western

far western blotting

Reconstituted Complex

FSW = 0.1736

Unknown

VPS462
AT1G74310

Predicted

Affinity Capture-MS

Enriched domain pair

Co-expression

FSW = 0.0201

Unknown

ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G26450

Predicted

interologs mapping

FSW = 0.0523

Unknown

BETA-13-GLUCANASE-RELATED
AT3G22480

Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.0091

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G45630

Predicted

Synthetic Lethality

FSW = 0.0298

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT3G58560

Predicted

synthetic growth defect

FSW = 0.0427

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT5G09350

Predicted

Synthetic Lethality

FSW = 0.0201

Unknown

PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2) BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT5G10960

Predicted

synthetic growth defect

FSW = 0.0366

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G55310

Predicted

Synthetic Rescue

FSW = 0.0192

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT5G57240

Predicted

two hybrid

Reconstituted Complex

FSW = 0.0239

Unknown

ORP4C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4C) OXYSTEROL BINDING
AT2G19710

Predicted

Affinity Capture-MS

FSW = 0.0559

Unknown

UNKNOWN PROTEIN
AT1G09460

Predicted

interologs mapping

FSW = 0.0336

Unknown

GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED
AT1G15920

Predicted

synthetic growth defect

FSW = 0.0404

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G55300

Predicted

Synthetic Rescue

FSW = 0.0186

Unknown

TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) DNA TOPOISOMERASE TYPE I
AT1G17730

Predicted

two hybrid

FSW = 0.1304

Unknown

VPS461 (VACUOLAR PROTEIN SORTING 461)
AT2G45500

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1399

Unknown

ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G19740Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0978

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT2G34560

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0711

Unknown

KATANIN PUTATIVE
AT3G19130

Predicted

Gene fusion method

FSW = 0.0395

Unknown

ATRBP47B (RNA-BINDING PROTEIN 47B) RNA BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454