Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G28720 - ( histone H2B putative )
40 Proteins interacs with AT2G28720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G13010 | PredictedAffinity Capture-MS | FSW = 0.0220
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT3G16950 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0232
| Unknown | LPD1 (LIPOAMIDE DEHYDROGENASE 1) DIHYDROLIPOYL DEHYDROGENASE |
AT2G44350 | PredictedAffinity Capture-MS | FSW = 0.0669
| Unknown | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
AT3G48870 | Predictedtwo hybrid | FSW = 0.0143
| Unknown | HSP93-III ATP BINDING / ATPASE/ DNA BINDING / NUCLEASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT2G20690 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1169
| Unknown | LUMAZINE-BINDING FAMILY PROTEIN |
AT1G19660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0082
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G58640 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | SELENOPROTEIN-RELATED |
AT3G55810 | PredictedAffinity Capture-MS | FSW = 0.0263
| Unknown | PYRUVATE KINASE PUTATIVE |
AT1G20090 | PredictedAffinity Capture-MS | FSW = 0.0122
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
AT4G04340 | PredictedAffinity Capture-MS | FSW = 0.0149
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT5G40370 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0174
| Unknown | GLUTAREDOXIN PUTATIVE |
AT5G19990 | PredictedAffinity Capture-MS | FSW = 0.0187
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT2G27530 | PredictedAffinity Capture-MS | FSW = 0.0286
| Unknown | PGY1 (PIGGYBACK1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G46900 | PredictedAffinity Capture-MS | FSW = 0.0108
| Unknown | COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0992
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0070
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT1G65440 | PredictedAffinity Capture-MS | FSW = 0.0079
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT2G38880 | PredictedAffinity Capture-MS | FSW = 0.0091
| Unknown | NF-YB1 (NUCLEAR FACTOR Y SUBUNIT B1) TRANSCRIPTION FACTOR |
AT4G39200 | Predictedsynthetic growth defect | FSW = 0.0099
| Unknown | 40S RIBOSOMAL PROTEIN S25 (RPS25E) |
AT1G08260 | PredictedAffinity Capture-MS | FSW = 0.0104
| Unknown | TIL1 (TILTED 1) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT1G12130 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G12730 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT1G27320 | PredictedAffinity Capture-MS | FSW = 0.0417
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
AT1G31170 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0396
| Unknown | SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS |
AT1G34580 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0208
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G55255 | Predictedtwo hybrid | FSW = 0.0079
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT2G01290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-Western | FSW = 0.0629
| Unknown | RIBOSE-5-PHOSPHATE ISOMERASE |
AT1G53900 | PredictedAffinity Capture-MS | FSW = 0.0309
| Unknown | GTP BINDING / TRANSLATION INITIATION FACTOR |
AT5G24410 | PredictedAffinity Capture-MS | FSW = 0.0195
| Unknown | GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED |
AT5G37830 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1105
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
AT5G57270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.0511
| Unknown | UNKNOWN PROTEIN |
AT2G35390 | PredictedAffinity Capture-MStwo hybrid | FSW = 0.0306
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT2G40010 | PredictedAffinity Capture-MS | FSW = 0.0233
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P0 (RPP0A) |
AT2G46070 | PredictedAffinity Capture-MS | FSW = 0.0486
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
AT3G11230 | PredictedAffinity Capture-MS | FSW = 0.0449
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G14070 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.0473
| Unknown | CAX9 (CATION EXCHANGER 9) CATION TRANSMEMBRANE TRANSPORTER/ CATIONCATION ANTIPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ POTASSIUM ION TRANSMEMBRANE TRANSPORTER/ SODIUM ION TRANSMEMBRANE TRANSPORTER |
AT4G17640 | PredictedAffinity Capture-MS | FSW = 0.0431
| Unknown | CKB2 PROTEIN KINASE CK2 REGULATOR |
AT4G26510 | PredictedAffinity Capture-MS | FSW = 0.0398
| Unknown | ATP BINDING / KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / URACIL PHOSPHORIBOSYLTRANSFERASE |
AT5G07070 | PredictedAffinity Capture-MS | FSW = 0.0593
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G54200 | Predictedtwo hybrid | FSW = 0.0205
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454