Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G28840 - ( ankyrin repeat family protein )

32 Proteins interacs with AT2G28840
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G21670

Experimental

two hybrid

FSW = 0.0306

Unknown

CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1) DOUBLE-STRANDED RNA BINDING / NUCLEOTIDE PHOSPHATASE
AT2G01950

Experimental

phage display

FSW = 0.0068

Unknown

BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE
AT5G26000

Predicted

Gene fusion method

FSW = 0.0097

Unknown

TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / THIOGLUCOSIDASE
AT5G66010

Predicted

Phenotypic Enhancement

FSW = 0.0305

Unknown

RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G30775

Predicted

two hybrid

FSW = 0.0627

Unknown

ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) PROLINE DEHYDROGENASE
AT5G48030

Predicted

Gene fusion method

FSW = 0.0508

Unknown

GFA2 (GAMETOPHYTIC FACTOR 2) HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G51590

Predicted

Gene fusion method

FSW = 0.0245

Unknown

MANNOSYL-OLIGOSACCHARIDE 12-ALPHA-MANNOSIDASE PUTATIVE
AT5G36170

Predicted

Gene fusion method

FSW = 0.0571

Unknown

HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) TRANSLATION RELEASE FACTOR/ TRANSLATION RELEASE FACTOR CODON SPECIFIC
AT1G03910

Predicted

Phenotypic Enhancement

FSW = 0.0323

Unknown

EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK)
AT4G00960

Predicted

Phenotypic Suppression

Enriched domain pair

Co-expression

FSW = 0.0571

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G56440

Predicted

two hybrid

FSW = 0.0571

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE-RELATED
AT3G07370

Predicted

two hybrid

FSW = 0.0176

Unknown

CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE
AT4G32910

Predicted

two hybrid

FSW = 0.0306

Unknown

INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN NUP85-LIKE (INTERPROIPR011502) HAS 161 BLAST HITS TO 158 PROTEINS IN 60 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 128 FUNGI - 10 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)
AT1G67070

Predicted

two hybrid

FSW = 0.0286

Unknown

DIN9 (DARK INDUCIBLE 9) MANNOSE-6-PHOSPHATE ISOMERASE
AT5G07070

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.0208

Unknown

CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G13160

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.1730

Unknown

PBS1 (AVRPPHB SUSCEPTIBLE 1) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G65530

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.2162

Unknown

PROTEIN KINASE PUTATIVE
AT3G57120

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.2162

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G38390

Predicted

Gene fusion method

FSW = 0.2392

Unknown

F-BOX FAMILY PROTEIN
AT2G31750

Predicted

Gene fusion method

FSW = 0.1572

Unknown

UGT74D1 (UDP-GLUCOSYL TRANSFERASE 74D1) UDP-GLYCOSYLTRANSFERASE/ ABSCISIC ACID GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS
AT2G13810

Predicted

Gene fusion method

FSW = 0.0245

Unknown

ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT3G52680

Predicted

Gene fusion method

FSW = 0.2392

Unknown

F-BOX FAMILY PROTEIN
AT1G13780

Predicted

Gene fusion method

FSW = 0.1268

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) FBD (INTERPROIPR013596) FBD-LIKE (INTERPROIPR006566) LEUCINE-RICH REPEAT 2 (INTERPROIPR013101) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS F-BOX FAMILY PROTEIN (TAIRAT5G277501) HAS 1281 BLAST HITS TO 1250 PROTEINS IN 10 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 1279 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK)
AT2G23260

Predicted

Gene fusion method

FSW = 0.0861

Unknown

UGT84B1 (UDP-GLUCOSYL TRANSFERASE 84B1) UDP-GLYCOSYLTRANSFERASE/ ABSCISIC ACID GLUCOSYLTRANSFERASE/ INDOLE-3-ACETATE BETA-GLUCOSYLTRANSFERASE/ QUERCETIN 7-O-GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT5G60990

Predicted

Gene fusion method

FSW = 0.0183

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE (RH10)
AT5G38820

Predicted

Gene fusion method

FSW = 0.0254

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT3G47340

Predicted

Gene fusion method

FSW = 0.0508

Unknown

ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING)
AT4G14090

Predicted

Gene fusion method

FSW = 0.2162

Unknown

UDP-GLUCORONOSYL/UDP-GLUCOSYL TRANSFERASE FAMILY PROTEIN
AT1G66300

Predicted

Gene fusion method

FSW = 0.1268

Unknown

F-BOX FAMILY PROTEIN
AT2G18340

Predicted

Gene fusion method

FSW = 0.0239

Unknown

LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN
AT2G37550

Predicted

Gene fusion method

FSW = 0.0079

Unknown

AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT1G09270

Predicted

Gene fusion method

FSW = 0.0052

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454