Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G28840 - ( ankyrin repeat family protein )
32 Proteins interacs with AT2G28840Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G21670 | Experimentaltwo hybrid | FSW = 0.0306
| Unknown | CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1) DOUBLE-STRANDED RNA BINDING / NUCLEOTIDE PHOSPHATASE |
AT2G01950 | Experimentalphage display | FSW = 0.0068
| Unknown | BRL2 (BRI1-LIKE 2) ATP BINDING / PROTEIN SERINE/THREONINE KINASE/ TRANSMEMBRANE RECEPTOR PROTEIN SERINE/THREONINE KINASE |
AT5G26000 | PredictedGene fusion method | FSW = 0.0097
| Unknown | TGG1 (THIOGLUCOSIDE GLUCOHYDROLASE 1) HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / THIOGLUCOSIDASE |
AT5G66010 | PredictedPhenotypic Enhancement | FSW = 0.0305
| Unknown | RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G30775 | Predictedtwo hybrid | FSW = 0.0627
| Unknown | ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5) PROLINE DEHYDROGENASE |
AT5G48030 | PredictedGene fusion method | FSW = 0.0508
| Unknown | GFA2 (GAMETOPHYTIC FACTOR 2) HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G51590 | PredictedGene fusion method | FSW = 0.0245
| Unknown | MANNOSYL-OLIGOSACCHARIDE 12-ALPHA-MANNOSIDASE PUTATIVE |
AT5G36170 | PredictedGene fusion method | FSW = 0.0571
| Unknown | HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109) TRANSLATION RELEASE FACTOR/ TRANSLATION RELEASE FACTOR CODON SPECIFIC |
AT1G03910 | PredictedPhenotypic Enhancement | FSW = 0.0323
| Unknown | EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK) |
AT4G00960 | PredictedPhenotypic SuppressionEnriched domain pairCo-expression | FSW = 0.0571
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G56440 | Predictedtwo hybrid | FSW = 0.0571
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE-RELATED |
AT3G07370 | Predictedtwo hybrid | FSW = 0.0176
| Unknown | CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN) UBIQUITIN-PROTEIN LIGASE |
AT4G32910 | Predictedtwo hybrid | FSW = 0.0306
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN NUP85-LIKE (INTERPROIPR011502) HAS 161 BLAST HITS TO 158 PROTEINS IN 60 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 128 FUNGI - 10 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT1G67070 | Predictedtwo hybrid | FSW = 0.0286
| Unknown | DIN9 (DARK INDUCIBLE 9) MANNOSE-6-PHOSPHATE ISOMERASE |
AT5G07070 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.0208
| Unknown | CIPK2 (CBL-INTERACTING PROTEIN KINASE 2) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G13160 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.1730
| Unknown | PBS1 (AVRPPHB SUSCEPTIBLE 1) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G65530 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.2162
| Unknown | PROTEIN KINASE PUTATIVE |
AT3G57120 | PredictedEnriched domain pairGene fusion methodCo-expression | FSW = 0.2162
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G38390 | PredictedGene fusion method | FSW = 0.2392
| Unknown | F-BOX FAMILY PROTEIN |
AT2G31750 | PredictedGene fusion method | FSW = 0.1572
| Unknown | UGT74D1 (UDP-GLUCOSYL TRANSFERASE 74D1) UDP-GLYCOSYLTRANSFERASE/ ABSCISIC ACID GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TRANSFERASE TRANSFERRING HEXOSYL GROUPS |
AT2G13810 | PredictedGene fusion method | FSW = 0.0245
| Unknown | ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G52680 | PredictedGene fusion method | FSW = 0.2392
| Unknown | F-BOX FAMILY PROTEIN |
AT1G13780 | PredictedGene fusion method | FSW = 0.1268
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) FBD (INTERPROIPR013596) FBD-LIKE (INTERPROIPR006566) LEUCINE-RICH REPEAT 2 (INTERPROIPR013101) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS F-BOX FAMILY PROTEIN (TAIRAT5G277501) HAS 1281 BLAST HITS TO 1250 PROTEINS IN 10 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 1279 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT2G23260 | PredictedGene fusion method | FSW = 0.0861
| Unknown | UGT84B1 (UDP-GLUCOSYL TRANSFERASE 84B1) UDP-GLYCOSYLTRANSFERASE/ ABSCISIC ACID GLUCOSYLTRANSFERASE/ INDOLE-3-ACETATE BETA-GLUCOSYLTRANSFERASE/ QUERCETIN 7-O-GLUCOSYLTRANSFERASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT5G60990 | PredictedGene fusion method | FSW = 0.0183
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE (RH10) |
AT5G38820 | PredictedGene fusion method | FSW = 0.0254
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G47340 | PredictedGene fusion method | FSW = 0.0508
| Unknown | ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) ASPARAGINE SYNTHASE (GLUTAMINE-HYDROLYZING) |
AT4G14090 | PredictedGene fusion method | FSW = 0.2162
| Unknown | UDP-GLUCORONOSYL/UDP-GLUCOSYL TRANSFERASE FAMILY PROTEIN |
AT1G66300 | PredictedGene fusion method | FSW = 0.1268
| Unknown | F-BOX FAMILY PROTEIN |
AT2G18340 | PredictedGene fusion method | FSW = 0.0239
| Unknown | LATE EMBRYOGENESIS ABUNDANT DOMAIN-CONTAINING PROTEIN / LEA DOMAIN-CONTAINING PROTEIN |
AT2G37550 | PredictedGene fusion method | FSW = 0.0079
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT1G09270 | PredictedGene fusion method | FSW = 0.0052
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454