Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G28910 - ( CXIP4 (CAX INTERACTING PROTEIN 4) nucleic acid binding / zinc ion binding )

22 Proteins interacs with AT2G28910
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G38170

Experimental

in vitro

FSW = 0.0345

Class B:

vacuole

nucleus

CAX1 (CATION EXCHANGER 1) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER
AT1G56070

Predicted

two hybrid

two hybrid

FSW = 0.0198

Class C:

nucleus

LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT5G60390

Predicted

two hybrid

FSW = 0.0144

Class C:

nucleus

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT1G07940Predicted

two hybrid

two hybrid

FSW = 0.0261

Class C:

nucleus

ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA
AT3G19840

Predicted

two hybrid

FSW = 0.0133

Class C:

nucleus

FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT2G26940

Predicted

two hybrid

FSW = 0.0356

Class C:

nucleus

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT4G16520

Predicted

two hybrid

FSW = 0.0462

Unknown

ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING
AT2G05630

Predicted

two hybrid

two hybrid

FSW = 0.0462

Unknown

AUTOPHAGY 8D (APG8D)
AT3G12390

Predicted

two hybrid

FSW = 0.0334

Unknown

NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE
AT1G20110

Predicted

two hybrid

FSW = 0.0400

Unknown

ZINC FINGER (FYVE TYPE) FAMILY PROTEIN
AT5G25450

Predicted

two hybrid

two hybrid

FSW = 0.0345

Unknown

UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE
AT5G26980

Predicted

two hybrid

two hybrid

FSW = 0.0513

Unknown

SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR
AT3G20050

Predicted

two hybrid

two hybrid

FSW = 0.0112

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT1G53720

Predicted

two hybrid

two hybrid

FSW = 0.0433

Unknown

CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G29210

Predicted

two hybrid

two hybrid

FSW = 0.0659

Unknown

SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN
AT3G56510

Predicted

two hybrid

two hybrid

FSW = 0.0136

Unknown

TBP-BINDING PROTEIN PUTATIVE
AT4G20325

Predicted

two hybrid

FSW = 0.0578

Unknown

UNKNOWN PROTEIN
AT5G05540

Predicted

two hybrid

FSW = 0.0306

Unknown

SDN2 (SMALL RNA DEGRADING NUCLEASE 2) EXONUCLEASE/ NUCLEIC ACID BINDING
AT4G19190

Predicted

two hybrid

two hybrid

FSW = 0.0965

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT5G09740

Predicted

two hybrid

two hybrid

FSW = 0.0068

Unknown

HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING
AT5G13850

Predicted

two hybrid

FSW = 0.0345

Unknown

NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)
AT1G33040

Predicted

two hybrid

FSW = 0.0125

Unknown

NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454