Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G28910 - ( CXIP4 (CAX INTERACTING PROTEIN 4) nucleic acid binding / zinc ion binding )
22 Proteins interacs with AT2G28910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G38170 | Experimentalin vitro | FSW = 0.0345
| Class B:vacuolenucleus | CAX1 (CATION EXCHANGER 1) CALCIUM ION TRANSMEMBRANE TRANSPORTER/ CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER |
AT1G56070 | Predictedtwo hybridtwo hybrid | FSW = 0.0198
| Class C:nucleus | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0144
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | Predictedtwo hybridtwo hybrid | FSW = 0.0261
| Class C:nucleus | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G19840 | Predictedtwo hybrid | FSW = 0.0133
| Class C:nucleus | FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN |
AT2G26940 | Predictedtwo hybrid | FSW = 0.0356
| Class C:nucleus | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT4G16520 | Predictedtwo hybrid | FSW = 0.0462
| Unknown | ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING |
AT2G05630 | Predictedtwo hybridtwo hybrid | FSW = 0.0462
| Unknown | AUTOPHAGY 8D (APG8D) |
AT3G12390 | Predictedtwo hybrid | FSW = 0.0334
| Unknown | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA CHAIN PROTEIN PUTATIVE / ALPHA-NAC PUTATIVE |
AT1G20110 | Predictedtwo hybrid | FSW = 0.0400
| Unknown | ZINC FINGER (FYVE TYPE) FAMILY PROTEIN |
AT5G25450 | Predictedtwo hybridtwo hybrid | FSW = 0.0345
| Unknown | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KDA PROTEIN PUTATIVE |
AT5G26980 | Predictedtwo hybridtwo hybrid | FSW = 0.0513
| Unknown | SYP41 (SYNTAXIN OF PLANTS 41) SNAP RECEPTOR |
AT3G20050 | Predictedtwo hybridtwo hybrid | FSW = 0.0112
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT1G53720 | Predictedtwo hybridtwo hybrid | FSW = 0.0433
| Unknown | CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G29210 | Predictedtwo hybridtwo hybrid | FSW = 0.0659
| Unknown | SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN |
AT3G56510 | Predictedtwo hybridtwo hybrid | FSW = 0.0136
| Unknown | TBP-BINDING PROTEIN PUTATIVE |
AT4G20325 | Predictedtwo hybrid | FSW = 0.0578
| Unknown | UNKNOWN PROTEIN |
AT5G05540 | Predictedtwo hybrid | FSW = 0.0306
| Unknown | SDN2 (SMALL RNA DEGRADING NUCLEASE 2) EXONUCLEASE/ NUCLEIC ACID BINDING |
AT4G19190 | Predictedtwo hybridtwo hybrid | FSW = 0.0965
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT5G09740 | Predictedtwo hybridtwo hybrid | FSW = 0.0068
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G13850 | Predictedtwo hybrid | FSW = 0.0345
| Unknown | NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) |
AT1G33040 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | NACA5 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 5) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454