Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G29080 - ( ftsh3 (FtsH protease 3) ATP-dependent peptidase/ ATPase )

24 Proteins interacs with AT2G29080
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G07510

Experimental

Affinity Capture-Western

FSW = 0.4808

Class A:

unclear

plastid

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

cytosol (p = 0.67)

FTSH10 (FTSH PROTEASE 10) ATP BINDING / ATPASE/ METALLOENDOPEPTIDASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / ZINC ION BINDING
AT1G03860

Predicted

Affinity Capture-MS

FSW = 0.1548

Class C:

unclear

plastid

mitochondrion

ATPHB2 (PROHIBITIN 2)
AT5G40770

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1103

Class C:

unclear

mitochondrion

ATPHB3 (PROHIBITIN 3)
AT2G26140

Predicted

Synthetic Lethality

FSW = 0.1852

Class C:

unclear

FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE
AT1G48030

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0559

Class C:

plastid

mitochondrion

MTLPD1 (MITOCHONDRIAL LIPOAMIDE DEHYDROGENASE 1) ATP BINDING / DIHYDROLIPOYL DEHYDROGENASE
AT1G50250

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1109

Class C:

plastid

FTSH1 (FTSH PROTEASE 1) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE
AT5G42270

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0788

Class C:

plastid

VAR1 (VARIEGATED 1) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE
AT3G10050

Predicted

Phenotypic Suppression

FSW = 0.0525

Class C:

plastid

OMR1 (L-O-METHYLTHREONINE RESISTANT 1) L-THREONINE AMMONIA-LYASE
AT1G06430

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1142

Class C:

plastid

FTSH8 ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE/ ZINC ION BINDING
AT2G44950

Predicted

synthetic growth defect

FSW = 0.0174

Class C:

mitochondrion

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT5G26860

Predicted

interologs mapping

FSW = 0.0680

Class C:

mitochondrion

LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT3G09840

Predicted

Enriched domain pair

Gene fusion method

Co-expression

FSW = 0.0274

Unknown

CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT5G23740

Predicted

two hybrid

FSW = 0.0070

Unknown

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT4G29510

Predicted

interaction prediction

FSW = 0.0165

Unknown

PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT5G61760

Predicted

two hybrid

FSW = 0.0750

Unknown

ATIPK2BETA INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ INOSITOL TRISPHOSPHATE 6-KINASE
AT3G08730

Predicted

two hybrid

FSW = 0.0056

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT2G46470

Predicted

interologs mapping

FSW = 0.1003

Unknown

OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE)
AT5G07370

Predicted

two hybrid

FSW = 0.0664

Unknown

IPK2A (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA) INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ INOSITOL TRISPHOSPHATE 6-KINASE
AT1G31660

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0138

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S BYSTIN (INTERPROIPR007955) HAS 370 BLAST HITS TO 362 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 7 METAZOA - 139 FUNGI - 93 PLANTS - 32 VIRUSES - 0 OTHER EUKARYOTES - 99 (SOURCE NCBI BLINK)
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0365

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0335

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G51740

Predicted

Phenotypic Enhancement

FSW = 0.0645

Unknown

PEPTIDASE M48 FAMILY PROTEIN
AT4G35970

Predicted

interaction prediction

FSW = 0.0356

Unknown

APX5 (ASCORBATE PEROXIDASE 5) L-ASCORBATE PEROXIDASE/ HEME BINDING / PEROXIDASE
AT1G11290

Predicted

Gene fusion method

FSW = 0.0750

Unknown

CRR22 (CHLORORESPIRATORY REDUCTION22) ENDONUCLEASE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454