Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G29190 - ( APUM2 (Arabidopsis Pumilio 2) RNA binding / binding )
55 Proteins interacs with AT2G29190| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT4G27090
   | PredictedPhenotypic Enhancement | FSW = 0.3273
| Unknown | 60S RIBOSOMAL PROTEIN L14 (RPL14B) |
| AT3G47520
| PredictedPhenotypic Enhancement | FSW = 0.2424
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
| AT3G08710
| PredictedPhenotypic Enhancement | FSW = 0.1016
| Unknown | ATH9 (THIOREDOXIN H-TYPE 9) |
| AT1G44170
| Predictedinterologs mappinginterologs mapping | FSW = 0.0169
| Unknown | ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD) |
| AT1G55920
| PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.2681
| Unknown | ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE |
| AT3G19170
| PredictedSynthetic Rescue | FSW = 0.0235
| Unknown | ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE |
| AT3G55400
| PredictedPhenotypic Enhancement | FSW = 0.1033
| Unknown | OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING |
| AT3G54670
| PredictedPhenotypic Enhancement | FSW = 0.0466
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
| AT5G23740
| PredictedSynthetic Lethality | FSW = 0.0032
| Unknown | RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT1G71860
| PredictedSynthetic Rescue | FSW = 0.0222
| Unknown | PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE |
| AT2G27500
| PredictedSynthetic Lethality | FSW = 0.0444
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
| AT4G36640
| PredictedPhenotypic Enhancement | FSW = 0.1256
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT1G20090
| Predictedinterologs mapping | FSW = 0.0238
| Unknown | ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING |
| AT3G19930
| PredictedPhenotypic Enhancement | FSW = 0.2045
| Unknown | STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G26340
| PredictedPhenotypic Enhancement | FSW = 0.2358
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
| AT1G69850
| PredictedPhenotypic Enhancement | FSW = 0.2333
| Unknown | ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER |
| AT5G45380
| PredictedSynthetic Lethality | FSW = 0.0209
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
| AT2G39480
| PredictedPhenotypic Enhancement | FSW = 0.2217
| Unknown | PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT2G29140
| PredictedPhylogenetic profile method | FSW = 0.0305
| Unknown | APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING |
| AT5G65940
| PredictedPhenotypic Enhancement | FSW = 0.1290
| Unknown | CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE |
| AT2G34450
| PredictedPhenotypic Enhancement | FSW = 0.2420
| Unknown | HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN |
| AT3G13445
| PredictedPhenotypic Enhancement | FSW = 0.0487
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
| AT3G52250
| PredictedSynthetic Lethality | FSW = 0.0336
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
| AT1G76300
| PredictedPhenotypic Enhancement | FSW = 0.0847
| Unknown | SMD3 (SNRNP CORE PROTEIN SMD3) |
| AT1G53165
| PredictedPhenotypic Enhancement | FSW = 0.2177
| Unknown | ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT2G15430
| PredictedPhenotypic Enhancement | FSW = 0.1112
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT3G29800
| PredictedPhenotypic Enhancement | FSW = 0.2000
| Unknown | AAA-TYPE ATPASE FAMILY |
| AT4G33730
| PredictedPhenotypic Enhancement | FSW = 0.2595
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT2G17800
| PredictedSynthetic Lethality | FSW = 0.0092
| Unknown | ARAC1 GTP BINDING |
| AT5G28060
| PredictedPhenotypic Enhancement | FSW = 0.3008
| Unknown | 40S RIBOSOMAL PROTEIN S24 (RPS24B) |
| AT4G39100
| PredictedPhenotypic EnhancementPhenotypic Suppression | FSW = 0.2988
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
| AT4G15900
| PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1516
| Unknown | PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT1G08910 | PredictedPhenotypic Enhancement | FSW = 0.0972
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
| AT1G18830 | PredictedPhenotypic Enhancement | FSW = 0.3171
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G25155 | PredictedSynthetic Lethality | FSW = 0.0203
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
| AT1G49520
| PredictedPhenotypic Enhancement | FSW = 0.1600
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
| AT1G61670
| PredictedPhenotypic Enhancement | FSW = 0.3740
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK) |
| AT2G01830
| PredictedPhenotypic Enhancement | FSW = 0.1497
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
| AT1G12130
| PredictedPhenotypic Enhancement | FSW = 0.0484
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
| AT2G27340
| PredictedPhenotypic Enhancement | FSW = 0.3354
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
| AT2G32765
| PredictedPhenotypic Suppression | FSW = 0.2017
| Unknown | SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG |
| AT2G46650
| Predictedtwo hybrid | FSW = 0.1133
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
| AT2G47870
| Predictedtwo hybrid | FSW = 0.0110
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
| AT4G14000
| PredictedSynthetic Lethality | FSW = 0.0103
| Unknown | UNKNOWN PROTEIN |
| AT4G21480
| PredictedPhenotypic Enhancement | FSW = 0.0482
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G19300
| PredictedPhenotypic Enhancement | FSW = 0.2817
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK) |
| AT5G52200
| PredictedPhenotypic Enhancement | FSW = 0.2567
| Unknown | UNKNOWN PROTEIN |
| AT5G52210
| PredictedPhenotypic Enhancement | FSW = 0.1401
| Unknown | ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING |
| AT5G57190
| PredictedPhenotypic Enhancement | FSW = 0.4364
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
| AT5G65690
| PredictedPhenotypic Enhancement | FSW = 0.2007
| Unknown | PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING |
| AT3G05960
| PredictedPhenotypic Enhancement | FSW = 0.1168
| Unknown | STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT3G06460
| PredictedPhenotypic Enhancement | FSW = 0.0941
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
| AT3G07270
| PredictedSynthetic Lethality | FSW = 0.0153
| Unknown | GTP CYCLOHYDROLASE I |
| AT3G25585
| PredictedSynthetic Lethality | FSW = 0.0801
| Unknown | AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS |
| AT3G10360
| PredictedPhylogenetic profile method | FSW = 0.0610
| Unknown | APUM4 (ARABIDOPSIS PUMILIO 4) RNA BINDING / BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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