Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G29190 - ( APUM2 (Arabidopsis Pumilio 2) RNA binding / binding )

55 Proteins interacs with AT2G29190
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G27090

Predicted

Phenotypic Enhancement

FSW = 0.3273

Unknown

60S RIBOSOMAL PROTEIN L14 (RPL14B)
AT3G47520

Predicted

Phenotypic Enhancement

FSW = 0.2424

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT3G08710

Predicted

Phenotypic Enhancement

FSW = 0.1016

Unknown

ATH9 (THIOREDOXIN H-TYPE 9)
AT1G44170

Predicted

interologs mapping

interologs mapping

FSW = 0.0169

Unknown

ALDH3H1 (ALDEHYDE DEHYDROGENASE 3H1) 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ ALDEHYDE DEHYDROGENASE (NAD)
AT1G55920

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.2681

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT3G19170

Predicted

Synthetic Rescue

FSW = 0.0235

Unknown

ATPREP1 (PRESEQUENCE PROTEASE 1) METALLOENDOPEPTIDASE
AT3G55400

Predicted

Phenotypic Enhancement

FSW = 0.1033

Unknown

OVA1 (OVULE ABORTION 1) ATP BINDING / AMINOACYL-TRNA LIGASE/ METHIONINE-TRNA LIGASE/ NUCLEOTIDE BINDING
AT3G54670

Predicted

Phenotypic Enhancement

FSW = 0.0466

Unknown

TTN8 (TITAN8) ATP BINDING / TRANSPORTER
AT5G23740

Predicted

Synthetic Lethality

FSW = 0.0032

Unknown

RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G71860

Predicted

Synthetic Rescue

FSW = 0.0222

Unknown

PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE
AT2G27500

Predicted

Synthetic Lethality

FSW = 0.0444

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT4G36640

Predicted

Phenotypic Enhancement

FSW = 0.1256

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G20090

Predicted

interologs mapping

FSW = 0.0238

Unknown

ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT3G19930

Predicted

Phenotypic Enhancement

FSW = 0.2045

Unknown

STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT5G26340

Predicted

Phenotypic Enhancement

FSW = 0.2358

Unknown

MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT1G69850

Predicted

Phenotypic Enhancement

FSW = 0.2333

Unknown

ATNRT12 (ARABIDOPSIS THALIANA NITRATE TRANSPORTER 12) CALCIUM ION BINDING / TRANSPORTER
AT5G45380

Predicted

Synthetic Lethality

FSW = 0.0209

Unknown

SODIUMSOLUTE SYMPORTER FAMILY PROTEIN
AT2G39480

Predicted

Phenotypic Enhancement

FSW = 0.2217

Unknown

PGP6 (P-GLYCOPROTEIN 6) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G29140

Predicted

Phylogenetic profile method

FSW = 0.0305

Unknown

APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING
AT5G65940

Predicted

Phenotypic Enhancement

FSW = 0.1290

Unknown

CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1) 3-HYDROXYISOBUTYRYL-COA HYDROLASE
AT2G34450

Predicted

Phenotypic Enhancement

FSW = 0.2420

Unknown

HIGH MOBILITY GROUP (HMG1/2) FAMILY PROTEIN
AT3G13445

Predicted

Phenotypic Enhancement

FSW = 0.0487

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G52250

Predicted

Synthetic Lethality

FSW = 0.0336

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT1G76300

Predicted

Phenotypic Enhancement

FSW = 0.0847

Unknown

SMD3 (SNRNP CORE PROTEIN SMD3)
AT1G53165

Predicted

Phenotypic Enhancement

FSW = 0.2177

Unknown

ATMAP4K ALPHA1 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G15430

Predicted

Phenotypic Enhancement

FSW = 0.1112

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT3G29800

Predicted

Phenotypic Enhancement

FSW = 0.2000

Unknown

AAA-TYPE ATPASE FAMILY
AT4G33730

Predicted

Phenotypic Enhancement

FSW = 0.2595

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G17800

Predicted

Synthetic Lethality

FSW = 0.0092

Unknown

ARAC1 GTP BINDING
AT5G28060

Predicted

Phenotypic Enhancement

FSW = 0.3008

Unknown

40S RIBOSOMAL PROTEIN S24 (RPS24B)
AT4G39100

Predicted

Phenotypic Enhancement

Phenotypic Suppression

FSW = 0.2988

Unknown

SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR
AT4G15900

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

FSW = 0.1516

Unknown

PRL1 (PLEIOTROPIC REGULATORY LOCUS 1) BASAL TRANSCRIPTION REPRESSOR/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G08910Predicted

Phenotypic Enhancement

FSW = 0.0972

Unknown

EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING
AT1G18830Predicted

Phenotypic Enhancement

FSW = 0.3171

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT1G25155Predicted

Synthetic Lethality

FSW = 0.0203

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G49520

Predicted

Phenotypic Enhancement

FSW = 0.1600

Unknown

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT1G61670

Predicted

Phenotypic Enhancement

FSW = 0.3740

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRANSMEMBRANE RECEPTOR EUKARYOTA (INTERPROIPR009637) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G109801) HAS 473 BLAST HITS TO 471 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 242 FUNGI - 99 PLANTS - 92 VIRUSES - 0 OTHER EUKARYOTES - 38 (SOURCE NCBI BLINK)
AT2G01830

Predicted

Phenotypic Enhancement

FSW = 0.1497

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT1G12130

Predicted

Phenotypic Enhancement

FSW = 0.0484

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT2G27340

Predicted

Phenotypic Enhancement

FSW = 0.3354

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN CONTAINS INTERPRO DOMAIN/S N-ACETYLGLUCOSAMINYL PHOSPHATIDYLINOSITOL DEACETYLASE (INTERPROIPR003737) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED (TAIRAT3G581302) HAS 325 BLAST HITS TO 323 PROTEINS IN 156 SPECIES ARCHAE - 0 BACTERIA - 42 METAZOA - 92 FUNGI - 108 PLANTS - 28 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT2G32765

Predicted

Phenotypic Suppression

FSW = 0.2017

Unknown

SUMO5 (SMALL UBIQUITINRELATED MODIFIER 5) PROTEIN TAG
AT2G46650

Predicted

two hybrid

FSW = 0.1133

Unknown

CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING
AT2G47870

Predicted

two hybrid

FSW = 0.0110

Unknown

GLUTAREDOXIN FAMILY PROTEIN
AT4G14000

Predicted

Synthetic Lethality

FSW = 0.0103

Unknown

UNKNOWN PROTEIN
AT4G21480

Predicted

Phenotypic Enhancement

FSW = 0.0482

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT5G19300

Predicted

Phenotypic Enhancement

FSW = 0.2817

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEIC ACID-BINDING OB-FOLD-LIKE (INTERPROIPR016027) PROTEIN OF UNKNOWN FUNCTION DUF171 (INTERPROIPR003750) HAS 4766 BLAST HITS TO 2044 PROTEINS IN 217 SPECIES ARCHAE - 72 BACTERIA - 102 METAZOA - 2264 FUNGI - 372 PLANTS - 195 VIRUSES - 4 OTHER EUKARYOTES - 1757 (SOURCE NCBI BLINK)
AT5G52200

Predicted

Phenotypic Enhancement

FSW = 0.2567

Unknown

UNKNOWN PROTEIN
AT5G52210

Predicted

Phenotypic Enhancement

FSW = 0.1401

Unknown

ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) GTP BINDING
AT5G57190

Predicted

Phenotypic Enhancement

FSW = 0.4364

Unknown

PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE
AT5G65690

Predicted

Phenotypic Enhancement

FSW = 0.2007

Unknown

PCK2 (PHOSPHOENOLPYRUVATE CARBOXYKINASE 2) ATP BINDING / PHOSPHOENOLPYRUVATE CARBOXYKINASE (ATP)/ PHOSPHOENOLPYRUVATE CARBOXYKINASE/ PURINE NUCLEOTIDE BINDING
AT3G05960

Predicted

Phenotypic Enhancement

FSW = 0.1168

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G06460

Predicted

Phenotypic Enhancement

FSW = 0.0941

Unknown

GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT3G07270

Predicted

Synthetic Lethality

FSW = 0.0153

Unknown

GTP CYCLOHYDROLASE I
AT3G25585

Predicted

Synthetic Lethality

FSW = 0.0801

Unknown

AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE) PHOSPHATIDYLTRANSFERASE/ PHOSPHOTRANSFERASE FOR OTHER SUBSTITUTED PHOSPHATE GROUPS
AT3G10360

Predicted

Phylogenetic profile method

FSW = 0.0610

Unknown

APUM4 (ARABIDOPSIS PUMILIO 4) RNA BINDING / BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454