Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G29900 - ( presenilin family protein )
37 Proteins interacs with AT2G29900Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G52640 | PredictedAffinity Capture-Westernin vivoAffinity Capture-Westernin vivo | FSW = 0.0806
| Unknown | NICASTRIN-RELATED |
AT2G26140 | Predictedtwo hybrid | FSW = 0.0267
| Unknown | FTSH4 (FTSH PROTEASE 4) ATP-DEPENDENT PEPTIDASE/ ATPASE/ METALLOPEPTIDASE |
AT5G10450 | PredictedPhenotypic Enhancement | FSW = 0.0204
| Unknown | GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G55350 | Predictedin vitroin vivotwo hybridAffinity Capture-MS | FSW = 0.0400
| Unknown | DEK1 (DEFECTIVE KERNEL 1) CALCIUM-DEPENDENT CYSTEINE-TYPE ENDOPEPTIDASE/ CYSTEINE-TYPE ENDOPEPTIDASE |
AT5G47100 | Predictedtwo hybridin vivoin vivoin vivotwo hybridAffinity Capture-MS | FSW = 0.0087
| Unknown | CBL9 CALCIUM ION BINDING |
AT5G45970 | PredictedPhenotypic Enhancement | FSW = 0.0752
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT1G09630 | PredictedAffinity Capture-MS | FSW = 0.0087
| Unknown | ATRAB11C (ARABIDOPSIS RAB GTPASE 11C) GTP BINDING |
AT5G19330 | PredictedAffinity Capture-WesternAffinity Capture-Westernin vitroin vitroin vivoin vivoPhenotypic SuppressionAffinity Capture-Westernin vivoin vitro | FSW = 0.0151
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT5G24360 | Predictedin vivoin vitro | FSW = 0.0269
| Unknown | IRE1-1 (INOSITOL REQUIRING 1-1) ATP BINDING / ENDORIBONUCLEASE PRODUCING 5-PHOSPHOMONOESTERS / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G57015 | PredictedPhenotypic Enhancement | FSW = 0.0090
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G14170 | PredictedPhenotypic Enhancement | FSW = 0.0063
| Unknown | CHC1 |
AT5G60440 | PredictedPhenotypic Enhancement | FSW = 0.0148
| Unknown | AGL62 (AGAMOUS-LIKE 62) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G31440 | Predictedin vivoAffinity Capture-Westernin vitroin vivoin vitroPhenotypic EnhancementAffinity Capture-MS | FSW = 0.0759
| Unknown | PROTEIN BINDING |
AT5G09310 | PredictedAffinity Capture-WesternAffinity Capture-Westernin vitroin vivoAffinity Capture-MS | FSW = 0.0806
| Unknown | UNKNOWN PROTEIN |
AT1G17720 | PredictedPhenotypic Enhancement | FSW = 0.0172
| Unknown | ATB BETA NUCLEOTIDE BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G26210 | PredictedPhenotypic Enhancement | FSW = 0.0338
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT2G35110 | PredictedPhenotypic Enhancement | FSW = 0.0880
| Unknown | GRL (GNARLED) TRANSCRIPTION ACTIVATOR |
AT3G16040 | PredictedPhenotypic Enhancement | FSW = 0.0216
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 9 PLANT STRUCTURES EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE 4 ANTHESIS C GLOBULAR STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE CONTAINS INTERPRO DOMAIN/S TRANSLATION MACHINERY ASSOCIATED TMA7 (INTERPROIPR015157) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G152701) HAS 264 BLAST HITS TO 264 PROTEINS IN 91 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 153 FUNGI - 48 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 22 (SOURCE NCBI BLINK) |
AT3G48150 | PredictedPhenotypic Enhancement | FSW = 0.0183
| Unknown | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8) BINDING |
AT3G49500 | PredictedPhenotypic Enhancement | FSW = 0.0220
| Unknown | RDR6 (RNA-DEPENDENT RNA POLYMERASE 6) RNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING |
AT4G36080 | PredictedPhenotypic Enhancement | FSW = 0.0412
| Unknown | FAT DOMAIN-CONTAINING PROTEIN / PHOSPHATIDYLINOSITOL 3- AND 4-KINASE FAMILY PROTEIN |
AT5G09740 | PredictedPhenotypic Enhancement | FSW = 0.0159
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10980 | PredictedPhenotypic Enhancement | FSW = 0.0382
| Unknown | HISTONE H3 |
AT5G14670 | PredictedPhenotypic Enhancement | FSW = 0.0093
| Unknown | ATARFA1B (ADP-RIBOSYLATION FACTOR A1B) GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT5G23420 | PredictedPhenotypic Enhancement | FSW = 0.0861
| Unknown | HMGB6 TRANSCRIPTION FACTOR |
AT5G42400 | PredictedPhenotypic Enhancement | FSW = 0.0635
| Unknown | SDG25 (SET DOMAIN PROTEIN 25) |
AT5G47080 | PredictedPhenotypic Enhancement | FSW = 0.0083
| Unknown | CKB1 PROTEIN KINASE REGULATOR |
AT5G56950 | PredictedPhenotypic Enhancement | FSW = 0.0220
| Unknown | NAP13 (NUCLEOSOME ASSEMBLY PROTEIN 13) DNA BINDING |
AT5G58690 | PredictedPhenotypic Enhancement | FSW = 0.0462
| Unknown | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
AT5G63610 | PredictedPhenotypic Enhancement | FSW = 0.0101
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G26200 | PredictedPhenotypic Enhancementtwo hybrid | FSW = 0.0444
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE TYPE 12 (INTERPROIPR013217) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS METHYLTRANSFERASE (TAIRAT1G546501) HAS 1504 BLAST HITS TO 1429 PROTEINS IN 277 SPECIES ARCHAE - 33 BACTERIA - 213 METAZOA - 664 FUNGI - 202 PLANTS - 139 VIRUSES - 0 OTHER EUKARYOTES - 253 (SOURCE NCBI BLINK) |
AT1G71840 | Predictedin vivo | FSW = 0.0235
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G17200 | Predictedtwo hybridin vivoin vitroAffinity Capture-MS | FSW = 0.0418
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT5G46025 | PredictedAffinity Capture-MS | FSW = 0.0239
| Unknown | RAS-RELATED GTP-BINDING FAMILY PROTEIN |
AT2G17190 | PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0105
| Unknown | UBIQUITIN FAMILY PROTEIN |
AT5G58680 | Predictedtwo hybridtwo hybridin vivoin vivoin vitroin vitroin vitroin vivotwo hybrid | FSW = 0.0224
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT1G77460 | Predictedin vivoin vivoin vitroin vitroin vitroin vivo | FSW = 0.0364
| Unknown | BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454