Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G30050 - ( transducin family protein / WD-40 repeat family protein )
30 Proteins interacs with AT2G30050Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G48930 | Predictedbiochemical | FSW = 0.0097
| Class C:nucleus | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G17520 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0677
| Class C:nucleus | IRE1A ENDORIBONUCLEASE/ KINASE |
AT4G13980 | Predictedbiochemical | FSW = 0.0090
| Class C:nucleus | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G61760 | Predictedtwo hybrid | FSW = 0.1021
| Class C:nucleus | ATIPK2BETA INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ INOSITOL TRISPHOSPHATE 6-KINASE |
AT3G26590 | Predictedbiochemical | FSW = 0.0114
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G06290 | Predictedbiochemical | FSW = 0.0111
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G18640 | PredictedSynthetic Lethality | FSW = 0.0378
| Unknown | PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE |
AT1G31230 | PredictedSynthetic Lethality | FSW = 0.0662
| Unknown | AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I) ASPARTATE KINASE/ HOMOSERINE DEHYDROGENASE |
AT1G24610 | PredictedAffinity Capture-MS | FSW = 0.0970
| Unknown | SET DOMAIN-CONTAINING PROTEIN |
AT5G66210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0186
| Unknown | CPK28 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G76400 | PredictedAffinity Capture-MS | FSW = 0.0327
| Unknown | RIBOPHORIN I FAMILY PROTEIN |
AT1G72280 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0963
| Unknown | AERO1 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 1) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT5G07370 | Predictedtwo hybrid | FSW = 0.0566
| Unknown | IPK2A (INOSITOL POLYPHOSPHATE KINASE 2 ALPHA) INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ INOSITOL TRISPHOSPHATE 6-KINASE |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0203
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G63460 | Predictedtwo hybridtwo hybridAffinity Capture-Western | FSW = 0.0762
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G32910 | PredictedAffinity Capture-Western | FSW = 0.0664
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN NUP85-LIKE (INTERPROIPR011502) HAS 161 BLAST HITS TO 158 PROTEINS IN 60 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 128 FUNGI - 10 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT5G54200 | PredictedAffinity Capture-MSin vitroin vivotwo hybridCo-expression | FSW = 0.0047
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT1G02010 | PredictedAffinity Capture-MS | FSW = 0.0152
| Unknown | SEC1A (SIMILAR TO ELECTRON CAREER 1A) PROTEIN TRANSPORTER |
AT1G18830 | PredictedReconstituted ComplexAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternReconstituted Complextwo hybrid | FSW = 0.0931
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G44340 | PredictedAffinity Capture-MS | FSW = 0.1255
| Unknown | CEF (CLONE EIGHTY-FOUR) PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G05520 | PredictedAffinity Capture-MSco-fractionationCo-fractionationReconstituted Complex | FSW = 0.1774
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT5G61330 | Predictedinterologs mapping | FSW = 0.0381
| Unknown | RRNA PROCESSING PROTEIN-RELATED |
AT1G09580 | PredictedReconstituted Complex | FSW = 0.0885
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G22040 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0087
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G32270 | PredictedSynthetic Lethality | FSW = 0.0186
| Unknown | ATSYP24 SNAP RECEPTOR/ PROTEIN BINDING |
AT2G36300 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0505
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT5G60340 | Predictedtwo hybrid | FSW = 0.0241
| Unknown | MAOC-LIKE DEHYDRATASE DOMAIN-CONTAINING PROTEIN |
AT3G01340 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.3960
| Unknown | PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G74200 | PredictedGene fusion method | FSW = 0.0969
| Unknown | ATRLP16 (RECEPTOR LIKE PROTEIN 16) PROTEIN BINDING |
AT4G38150 | PredictedGene fusion method | FSW = 0.1829
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454