Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G30360 - ( SIP4 (SOS3-INTERACTING PROTEIN 4) kinase/ protein kinase )

16 Proteins interacs with AT2G30360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G30190

Experimental

protein kinase assay

biochemical

in vitro

FSW = 0.0443

Unknown

AHA2 ATPASE/ HYDROGEN-EXPORTING ATPASE PHOSPHORYLATIVE MECHANISM
AT4G26570

Experimental

FSW = 0.1897

Unknown

ATCBL3 (ARABIDOPSIS THALIANA CALCINEURIN B-LIKE 3) CALCIUM ION BINDING
AT5G55990

Experimental

two hybrid

two hybrid

Affinity Capture-Western

affinity technology

FSW = 0.1219

Unknown

CBL2 (CALCINEURIN B-LIKE 2) CALCIUM ION BINDING
AT4G02510

Experimental

far western blotting

FSW = 0.0602

Unknown

TOC159 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 159) TRANSMEMBRANE RECEPTOR
AT3G44110

Experimental

two hybrid

Affinity Capture-Western

FSW = 0.0228

Unknown

ATJ3 PROTEIN BINDING
AT4G17615

Experimental

FSW = 0.1377

Unknown

CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING
AT5G47100

Experimental

FSW = 0.0383

Unknown

CBL9 CALCIUM ION BINDING
AT1G47870

Experimental

FSW = 0.1905

Unknown

ATE2F2 DNA BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR
AT5G03415

Experimental

FSW = 0.0952

Unknown

DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION
AT5G22220

Experimental

FSW = 0.0535

Unknown

E2F1 DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR
AT5G02470

Experimental

FSW = 0.1270

Unknown

DPA TRANSCRIPTION FACTOR
AT5G24270

Experimental

FSW = 0.1466

Unknown

SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G01420

Experimental

pull down

pull down

two hybrid

FSW = 0.1062

Unknown

CBL5 (CALCINEURIN B-LIKE PROTEIN 5) CALCIUM ION BINDING
AT4G16350

Experimental

FSW = 0.2540

Unknown

CBL6 (CALCINEURIN B-LIKE PROTEIN 6) CALCIUM ION BINDING
AT2G38490

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0183

Unknown

CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G19130

Predicted

Gene fusion method

FSW = 0.0936

Unknown

ATRBP47B (RNA-BINDING PROTEIN 47B) RNA BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454