Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G30800 - ( HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM) ATP binding / helicase/ nucleic acid binding )
33 Proteins interacs with AT2G30800Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.0296
| Unknown | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.0846
| Unknown | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT5G03650 | PredictedAffinity Capture-MS | FSW = 0.1322
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT4G36490 | PredictedAffinity Capture-MS | FSW = 0.1169
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT1G28460 | PredictedPhenotypic Enhancement | FSW = 0.0514
| Unknown | AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G47630 | PredictedSynthetic Lethality | FSW = 0.1420
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G19980 | PredictedPhenotypic Suppression | FSW = 0.0914
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT1G77990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1681
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT2G29540 | PredictedAffinity Capture-MS | FSW = 0.1374
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G68020 | PredictedCo-purificationCo-purificationinterologs mappingAffinity Capture-MS | FSW = 0.1515
| Unknown | ATTPS6 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT1G80510 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0344
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT1G10090 | PredictedSynthetic Lethality | FSW = 0.0908
| Unknown | UNKNOWN PROTEIN |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1021
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G26320 | PredictedSynthetic Lethality | FSW = 0.1284
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G35350 | Predictedsynthetic growth defect | FSW = 0.1308
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G47830 | Predictedsynthetic growth defect | FSW = 0.0613
| Unknown | CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE |
AT1G68530 | PredictedPhenotypic Suppression | FSW = 0.1794
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT1G78770 | Predictedsynthetic growth defect | FSW = 0.0659
| Unknown | CELL DIVISION CYCLE FAMILY PROTEIN |
AT2G15910 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2268
| Unknown | CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN |
AT3G12200 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1567
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.1780
| Unknown | UNKNOWN PROTEIN |
AT3G50780 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1892
| Unknown | INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PRLI-INTERACTING FACTOR-RELATED (TAIRAT1G638501) HAS 173 BLAST HITS TO 173 PROTEINS IN 14 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 8 FUNGI - 0 PLANTS - 164 VIRUSES - 0 OTHER EUKARYOTES - 1 (SOURCE NCBI BLINK) |
AT4G04700 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.1903
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G21490 | Predictedsynthetic growth defect | FSW = 0.0956
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G27960 | PredictedSynthetic Rescue | FSW = 0.0435
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT4G38250 | PredictedPhenotypic Suppression | FSW = 0.0537
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G13860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1598
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G16980 | PredictedAffinity Capture-Westerntwo hybridsynthetic growth defect | FSW = 0.0996
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G41700 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0732
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G45620 | PredictedSynthetic Lethality | FSW = 0.1061
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT3G59540 | PredictedPhenotypic Enhancement | FSW = 0.0813
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT4G21480 | PredictedAffinity Capture-MS | FSW = 0.0583
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT5G19510 | PredictedAffinity Capture-MS | FSW = 0.0896
| Unknown | ELONGATION FACTOR 1B ALPHA-SUBUNIT 2 (EEF1BALPHA2) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454