Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G30860 - ( ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) copper ion binding / glutathione binding / glutathione peroxidase/ glutathione transferase )

21 Proteins interacs with AT2G30860
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G30870

Predicted

Enriched domain pair

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3673

Class C:

vacuole

plasma membrane

GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE
AT3G17820

Predicted

Phenotypic Enhancement

FSW = 0.0896

Class C:

plastid

plasma membrane

ATGSKB6 COPPER ION BINDING / GLUTAMATE-AMMONIA LIGASE
AT1G48470

Predicted

Phenotypic Enhancement

FSW = 0.1200

Class C:

plastid

plasma membrane

GLN15 (GLUTAMINE SYNTHETASE 15) GLUTAMATE-AMMONIA LIGASE
AT5G67630

Predicted

Affinity Capture-MS

FSW = 0.0300

Class C:

plastid

DNA HELICASE PUTATIVE
AT3G49830

Predicted

Affinity Capture-MS

FSW = 0.0686

Class C:

plastid

DNA HELICASE-RELATED
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0020

Class C:

plasma membrane

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G38290

Predicted

interologs mapping

FSW = 0.0392

Class C:

plasma membrane

ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER
AT5G41210

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.1309

Unknown

ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1) GLUTATHIONE TRANSFERASE
AT5G14800

Predicted

Phenotypic Suppression

FSW = 0.0238

Unknown

P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE
AT3G03190

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.3367

Unknown

ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11) GLUTATHIONE TRANSFERASE
AT1G17130

Predicted

interaction prediction

two hybrid

FSW = 0.0288

Unknown

CELL CYCLE CONTROL PROTEIN-RELATED
AT1G50030

Predicted

two hybrid

interaction prediction

FSW = 0.0131

Unknown

TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING
AT1G60620

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0152

Unknown

ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G45695

Predicted

Phenotypic Enhancement

FSW = 0.0381

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S UBIQUITIN RELATED MODIFIER 1 (INTERPROIPR015221) UBIQUITIN-RELATED MODIFIER 1 (INTERPROIPR017188) MOLYBDOPTERIN SYNTHASE/THIAMIN BIOSYNTHESIS SULPHUR CARRIER BETA-GRASP (INTERPROIPR016155) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G611131) HAS 238 BLAST HITS TO 238 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 72 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK)
AT3G45630

Predicted

Synthetic Lethality

FSW = 0.0100

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT5G59440

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.0148

Unknown

ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT3G24090

Predicted

Affinity Capture-MS

FSW = 0.0561

Unknown

GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE
AT3G06740

Predicted

Phenotypic Suppression

FSW = 0.0345

Unknown

ZINC FINGER (GATA TYPE) FAMILY PROTEIN
AT1G49860

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0324

Unknown

ATGSTF14 GLUTATHIONE TRANSFERASE
AT5G17220

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.3086

Unknown

ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) GLUTATHIONE TRANSFERASE
AT3G62760

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0970

Unknown

ATGSTF13 GLUTATHIONE TRANSFERASE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454