Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G30860 - ( ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9) copper ion binding / glutathione binding / glutathione peroxidase/ glutathione transferase )
21 Proteins interacs with AT2G30860Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G30870 | PredictedEnriched domain pairGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3673
| Class C:vacuoleplasma membrane | GSTF10 (HALIANA GLUTATHIONE S-TRANSFERASE PHI 10) COPPER ION BINDING / GLUTATHIONE BINDING / GLUTATHIONE TRANSFERASE |
AT3G17820 | PredictedPhenotypic Enhancement | FSW = 0.0896
| Class C:plastidplasma membrane | ATGSKB6 COPPER ION BINDING / GLUTAMATE-AMMONIA LIGASE |
AT1G48470 | PredictedPhenotypic Enhancement | FSW = 0.1200
| Class C:plastidplasma membrane | GLN15 (GLUTAMINE SYNTHETASE 15) GLUTAMATE-AMMONIA LIGASE |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0300
| Class C:plastid | DNA HELICASE PUTATIVE |
AT3G49830 | PredictedAffinity Capture-MS | FSW = 0.0686
| Class C:plastid | DNA HELICASE-RELATED |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0020
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G38290 | Predictedinterologs mapping | FSW = 0.0392
| Class C:plasma membrane | ATAMT2 (AMMONIUM TRANSPORTER 2) AMMONIUM TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY SECONDARY ACTIVE AMMONIUM TRANSMEMBRANE TRANSPORTER |
AT5G41210 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.1309
| Unknown | ATGSTT1 (GLUTATHIONE S-TRANSFERASE THETA 1) GLUTATHIONE TRANSFERASE |
AT5G14800 | PredictedPhenotypic Suppression | FSW = 0.0238
| Unknown | P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE) PYRROLINE-5-CARBOXYLATE REDUCTASE |
AT3G03190 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3367
| Unknown | ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11) GLUTATHIONE TRANSFERASE |
AT1G17130 | Predictedinteraction predictiontwo hybrid | FSW = 0.0288
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
AT1G50030 | Predictedtwo hybridinteraction prediction | FSW = 0.0131
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
AT1G60620 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0152
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G45695 | PredictedPhenotypic Enhancement | FSW = 0.0381
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S UBIQUITIN RELATED MODIFIER 1 (INTERPROIPR015221) UBIQUITIN-RELATED MODIFIER 1 (INTERPROIPR017188) MOLYBDOPTERIN SYNTHASE/THIAMIN BIOSYNTHESIS SULPHUR CARRIER BETA-GRASP (INTERPROIPR016155) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G611131) HAS 238 BLAST HITS TO 238 PROTEINS IN 125 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 72 PLANTS - 18 VIRUSES - 0 OTHER EUKARYOTES - 55 (SOURCE NCBI BLINK) |
AT3G45630 | PredictedSynthetic Lethality | FSW = 0.0100
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT5G59440 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0148
| Unknown | ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE |
AT3G24090 | PredictedAffinity Capture-MS | FSW = 0.0561
| Unknown | GLUTAMINE-FRUCTOSE-6-PHOSPHATE TRANSAMINASE (ISOMERIZING)/ SUGAR BINDING / TRANSAMINASE |
AT3G06740 | PredictedPhenotypic Suppression | FSW = 0.0345
| Unknown | ZINC FINGER (GATA TYPE) FAMILY PROTEIN |
AT1G49860 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0324
| Unknown | ATGSTF14 GLUTATHIONE TRANSFERASE |
AT5G17220 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.3086
| Unknown | ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) GLUTATHIONE TRANSFERASE |
AT3G62760 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0970
| Unknown | ATGSTF13 GLUTATHIONE TRANSFERASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454