Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G30970 - ( ASP1 (ASPARTATE AMINOTRANSFERASE 1) L-aspartate2-oxoglutarate aminotransferase )
23 Proteins interacs with AT2G30970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04120 | PredictedAffinity Capture-MS | FSW = 0.0497
| Class C:vacuolemitochondrion | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G12580 | PredictedAffinity Capture-MSin vitroin vivo | FSW = 0.0563
| Class C:vacuolemitochondrion | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT5G02500 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0690
| Class C:vacuole | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT1G56070 | PredictedAffinity Capture-MS | FSW = 0.0089
| Class C:vacuole | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT5G19550 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2028
| Class C:vacuole | ASP2 (ASPARTATE AMINOTRANSFERASE 2) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G08740 | Predictedtwo hybrid | FSW = 0.0832
| Class C:mitochondrion | NDC1 (NAD(P)H DEHYDROGENASE C1) NADH DEHYDROGENASE |
AT1G53240 | Predictedin vitroAffinity Capture-MS | FSW = 0.0476
| Class C:mitochondrion | MALATE DEHYDROGENASE (NAD) MITOCHONDRIAL |
AT5G11520 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2463
| Unknown | ASP3 (ASPARTATE AMINOTRANSFERASE 3) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G09660 | Predictedin vitroAffinity Capture-MS | FSW = 0.0195
| Unknown | PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE |
AT4G31990 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3135
| Unknown | ASP5 (ASPARTATE AMINOTRANSFERASE 5) L-ASPARTATE2-OXOGLUTARATE AMINOTRANSFERASE |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0088
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G02490 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0348
| Unknown | HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2) |
AT2G41620 | Predictedtwo hybrid | FSW = 0.0362
| Unknown | NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN |
AT3G12040 | PredictedAffinity Capture-MS | FSW = 0.0334
| Unknown | DNA-3-METHYLADENINE GLYCOSYLASE (MAG) |
AT1G62800 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0608
| Unknown | ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0021
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G27530 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER |
AT3G57350 | Predictedtwo hybridtwo hybrid | FSW = 0.0362
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.0413
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G54290 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0152
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.0276
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G42660 | PredictedSynthetic Lethality | FSW = 0.0331
| Unknown | NUCLEOTIDE BINDING |
AT5G26680 | PredictedSynthetic Lethality | FSW = 0.0203
| Unknown | ENDONUCLEASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454