Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G31060 - ( elongation factor family protein )
44 Proteins interacs with AT2G31060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G01280 | PredictedAffinity Capture-MS | FSW = 0.3218
| Unknown | VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) VOLTAGE-GATED ANION CHANNEL |
AT1G72730 | PredictedSynthetic Lethalitysynthetic growth defectSynthetic LethalityAffinity Capture-MS | FSW = 0.2098
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
AT1G14010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4821
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT2G04940 | PredictedAffinity Capture-MS | FSW = 0.1347
| Unknown | SCRAMBLASE-RELATED |
AT3G09820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6125
| Unknown | ADK1 (ADENOSINE KINASE 1) ADENOSINE KINASE/ COPPER ION BINDING |
AT1G48850 | PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | EMB1144 (EMBRYO DEFECTIVE 1144) CHORISMATE SYNTHASE |
AT1G07790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1846
| Unknown | HTB1 DNA BINDING |
AT5G13650 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0567
| Unknown | ELONGATION FACTOR FAMILY PROTEIN |
AT1G80030 | PredictedSynthetic Lethality | FSW = 0.0242
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT2G14120 | Predictedinterologs mapping | FSW = 0.0225
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT4G08690 | PredictedAffinity Capture-MS | FSW = 0.4530
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT4G04720 | PredictedAffinity Capture-MS | FSW = 0.2855
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G25800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.2780
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT1G63110 | PredictedAffinity Capture-MS | FSW = 0.1837
| Unknown | CELL DIVISION CYCLE PROTEIN-RELATED |
AT5G45380 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.5473
| Unknown | SODIUMSOLUTE SYMPORTER FAMILY PROTEIN |
AT4G14340 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.5192
| Unknown | CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59960 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5147
| Unknown | UNKNOWN PROTEIN |
AT2G40290 | Predictedtwo hybridtwo hybridsynthetic growth defectAffinity Capture-MS | FSW = 0.0512
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
AT1G30810 | PredictedAffinity Capture-MS | FSW = 0.4949
| Unknown | TRANSCRIPTION FACTOR |
AT3G08980 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.4787
| Unknown | SIGNAL PEPTIDASE I FAMILY PROTEIN |
AT3G55605 | PredictedAffinity Capture-MS | FSW = 0.2346
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT4G07820 | PredictedAffinity Capture-MS | FSW = 0.2274
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT3G54300 | PredictedAffinity Capture-MSAffinity Capture-Westerntwo hybrid | FSW = 0.2534
| Unknown | ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727) |
AT2G38960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSAffinity Capture-MS | FSW = 0.4437
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.1028
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G05830 | PredictedAffinity Capture-MS | FSW = 0.2273
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT1G06790 | PredictedAffinity Capture-MS | FSW = 0.3003
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G10350 | PredictedAffinity Capture-MS | FSW = 0.3567
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G10940 | PredictedReconstituted Complextwo hybrid | FSW = 0.2712
| Unknown | SNRK24 (SNF1-RELATED PROTEIN KINASE 24) KINASE |
AT1G21370 | PredictedAffinity Capture-MS | FSW = 0.1011
| Unknown | UNKNOWN PROTEIN |
AT1G59580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1154
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT2G13620 | PredictedAffinity Capture-MS | FSW = 0.1088
| Unknown | ATCHX15 MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
AT2G20410 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.6484
| Unknown | ACTIVATING SIGNAL COINTEGRATOR-RELATED |
AT2G29940 | PredictedAffinity Capture-MS | FSW = 0.4910
| Unknown | PDR3 (PLEIOTROPIC DRUG RESISTANCE 3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT1G74810 | PredictedAffinity Capture-Westerntwo hybrid | FSW = 0.0156
| Unknown | BOR5 ANION EXCHANGER |
AT3G05760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3559
| Unknown | NUCLEIC ACID BINDING / ZINC ION BINDING |
AT3G53880 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridCo-purificationsynthetic growth defect | FSW = 0.4947
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT4G31985 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.4424
| Unknown | 60S RIBOSOMAL PROTEIN L39 (RPL39C) |
AT5G03030 | PredictedAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-Western | FSW = 0.3601
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G16960 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybrid | FSW = 0.4112
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G59890 | PredictedAffinity Capture-MS | FSW = 0.2486
| Unknown | ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING |
AT3G12490 | PredictedAffinity Capture-MS | FSW = 0.0672
| Unknown | CYSTEINE PROTEASE INHIBITOR PUTATIVE / CYSTATIN PUTATIVE |
AT4G28470 | Predictedsynthetic growth defect | FSW = 0.0941
| Unknown | RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B) BINDING / ENZYME REGULATOR |
AT4G37490 | Predictedsynthetic growth defect | FSW = 0.1818
| Unknown | CYCB11 (CYCLIN B11) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454