Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G31260 - ( APG9 (autophagy 9) )

86 Proteins interacs with AT2G31260
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Synthetic Lethality

FSW = 0.1249

Unknown

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT1G51980

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0235

Unknown

MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT PUTATIVE
AT3G09630

Predicted

Phenotypic Suppression

FSW = 0.0236

Unknown

60S RIBOSOMAL PROTEIN L4/L1 (RPL4A)
AT1G23190

Predicted

synthetic growth defect

FSW = 0.0253

Unknown

PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.0950

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT1G20260

Predicted

Phenotypic Suppression

FSW = 0.0706

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT5G12010

Predicted

Affinity Capture-MS

FSW = 0.0234

Unknown

UNKNOWN PROTEIN
AT4G21980

Predicted

Phenotypic Suppression

FSW = 0.1040

Unknown

APG8A (AUTOPHAGY 8A) APG8 ACTIVATING ENZYME/ APG8-SPECIFIC PROTEASE/ ATG8 LIGASE
AT3G62870

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.0569

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G07090

Predicted

Phenotypic Enhancement

FSW = 0.0994

Unknown

40S RIBOSOMAL PROTEIN S4 (RPS4B)
AT1G74560

Predicted

Synthetic Lethality

FSW = 0.1272

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT4G33650

Predicted

Synthetic Lethality

FSW = 0.0774

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT3G48170

Predicted

Phenotypic Enhancement

FSW = 0.0805

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT3G20550

Predicted

co-fractionation

Co-fractionation

Synthetic Lethality

FSW = 0.0474

Unknown

DDL (DAWDLE)
AT3G62030

Predicted

interologs mapping

Synthetic Lethality

FSW = 0.0613

Unknown

PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4)
AT5G65430

Predicted

Phenotypic Enhancement

FSW = 0.0772

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G55920

Predicted

Phenotypic Enhancement

FSW = 0.1384

Unknown

ATSERAT21 (SERINE ACETYLTRANSFERASE 21) SERINE O-ACETYLTRANSFERASE
AT2G40400

Predicted

Phenotypic Enhancement

FSW = 0.0378

Unknown

UNKNOWN PROTEIN
AT5G15450

Predicted

Phenotypic Suppression

FSW = 0.1125

Unknown

CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G51820

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1704

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT4G30950

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0243

Unknown

FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE
AT5G53480

Predicted

biochemical

FSW = 0.0144

Unknown

IMPORTIN BETA-2 PUTATIVE
AT1G15170

Predicted

Affinity Capture-MS

FSW = 0.0250

Unknown

MATE EFFLUX FAMILY PROTEIN
AT5G63980

Predicted

Synthetic Rescue

FSW = 0.0144

Unknown

SAL1 3(2)5-BISPHOSPHATE NUCLEOTIDASE/ INOSITOL OR PHOSPHATIDYLINOSITOL PHOSPHATASE
AT5G60540

Predicted

Phenotypic Suppression

FSW = 0.1630

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT5G62880

Predicted

Affinity Capture-MS

FSW = 0.0117

Unknown

ARAC10 GTP BINDING
AT1G02500

Predicted

Synthetic Rescue

FSW = 0.0329

Unknown

SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE
AT2G21540

Predicted

Affinity Capture-MS

FSW = 0.0232

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT4G36490

Predicted

Affinity Capture-MS

FSW = 0.0537

Unknown

SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G10080

Predicted

synthetic growth defect

FSW = 0.0246

Unknown

ASPARTYL PROTEASE FAMILY PROTEIN
AT4G19690

Predicted

co-fractionation

Co-fractionation

FSW = 0.0736

Unknown

IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER
AT3G25540

Predicted

interologs mapping

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0817

Unknown

LAG1
AT4G33090

Predicted

Phenotypic Enhancement

FSW = 0.1504

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT2G23940

Predicted

two hybrid

two hybrid

FSW = 0.0449

Unknown

UNKNOWN PROTEIN
AT1G80050

Predicted

Synthetic Lethality

Phenotypic Suppression

FSW = 0.1346

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT1G77840

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0050

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT3G52250

Predicted

Phenotypic Enhancement

FSW = 0.1747

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT1G28460

Predicted

Phenotypic Suppression

FSW = 0.1117

Unknown

AGL59 (AGAMOUS-LIKE 59) DNA BINDING / TRANSCRIPTION FACTOR
AT4G25340

Predicted

Phenotypic Enhancement

FSW = 0.1186

Unknown

IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED
AT2G41380

Predicted

Synthetic Lethality

FSW = 0.0786

Unknown

EMBRYO-ABUNDANT PROTEIN-RELATED
AT2G20510

Predicted

Synthetic Lethality

FSW = 0.1127

Unknown

ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE
AT1G34065

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

SAMC2 (S-ADENOSYLMETHIONINE CARRIER 2) BINDING
AT5G02730

Predicted

Phenotypic Enhancement

FSW = 0.0352

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT5G66590

Predicted

Synthetic Lethality

FSW = 0.0703

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G54840

Predicted

Phenotypic Enhancement

FSW = 0.1081

Unknown

ARA6 GTP BINDING / GTPASE
AT5G08335

Predicted

Affinity Capture-MS

FSW = 0.0434

Unknown

ATSTE14B PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE
AT3G16050

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

A37 PROTEIN HETERODIMERIZATION
AT5G10330Predicted

Synthetic Lethality

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.0421

Unknown

HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) HISTIDINOL-PHOSPHATE TRANSAMINASE
AT4G17190

Predicted

Phenotypic Enhancement

FSW = 0.1270

Unknown

FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE
AT1G02080Predicted

Affinity Capture-MS

FSW = 0.0077

Unknown

TRANSCRIPTIONAL REGULATOR-RELATED
AT1G06090

Predicted

interologs mapping

FSW = 0.0362

Unknown

FATTY ACID DESATURASE FAMILY PROTEIN
AT1G60680

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0921

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT1G14310

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0121

Unknown

HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN
AT1G25155Predicted

Phenotypic Enhancement

FSW = 0.1057

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G52500

Predicted

Synthetic Lethality

FSW = 0.1393

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT1G59580

Predicted

Phenotypic Suppression

FSW = 0.0117

Unknown

ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE
AT1G68310

Predicted

Affinity Capture-MS

FSW = 0.0058

Unknown

VACUOLAR SORTING SIGNAL BINDING
AT1G75290

Predicted

Phenotypic Enhancement

FSW = 0.0499

Unknown

OXIDOREDUCTASE ACTING ON NADH OR NADPH
AT2G23820

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0734

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0188

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G34750

Predicted

Phenotypic Enhancement

FSW = 0.0872

Unknown

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT2G38600

Predicted

Phenotypic Enhancement

FSW = 0.0378

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT2G47090

Predicted

Synthetic Lethality

FSW = 0.1154

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT2G48100

Predicted

Synthetic Lethality

FSW = 0.1855

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G13210

Predicted

Phenotypic Enhancement

FSW = 0.0659

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE
AT3G18660

Predicted

Phenotypic Enhancement

FSW = 0.1081

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G59540Predicted

Synthetic Lethality

FSW = 0.1696

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT3G62770

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.0363

Unknown

ATATG18A
AT4G19560

Predicted

Phenotypic Suppression

FSW = 0.2300

Unknown

CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE
AT4G19880

Predicted

Synthetic Lethality

FSW = 0.0710

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN RESPONSE TO CADMIUM ION LOCATED IN CHLOROPLAST EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S GLUTATHIONE S-TRANSFERASE PREDICTED (INTERPROIPR016639) GLUTATHIONE S-TRANSFERASE C-TERMINAL (INTERPROIPR004046) GLUTATHIONE S-TRANSFERASE C-TERMINAL-LIKE (INTERPROIPR010987) GLUTATHIONE S-TRANSFERASE/CHLORIDE CHANNEL C-TERMINAL (INTERPROIPR017933) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G450201) HAS 1635 BLAST HITS TO 1635 PROTEINS IN 489 SPECIES ARCHAE - 12 BACTERIA - 905 METAZOA - 23 FUNGI - 158 PLANTS - 57 VIRUSES - 0 OTHER EUKARYOTES - 480 (SOURCE NCBI BLINK)
AT4G38250

Predicted

Phenotypic Suppression

FSW = 0.0914

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G44830

Predicted

Phenotypic Enhancement

FSW = 0.1099

Unknown

GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN
AT5G49560

Predicted

Phenotypic Enhancement

FSW = 0.1085

Unknown

UNKNOWN PROTEIN
AT5G50130

Predicted

Affinity Capture-MS

FSW = 0.0391

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT5G67540

Predicted

Phenotypic Enhancement

FSW = 0.0475

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G04710

Predicted

Synthetic Lethality

FSW = 0.0337

Unknown

ANKYRIN REPEAT FAMILY PROTEIN
AT3G56440

Predicted

Affinity Capture-Western

FSW = 0.0200

Unknown

ATATG18D
AT3G58560

Predicted

Affinity Capture-MS

FSW = 0.0029

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G00800Predicted

Phenotypic Enhancement

FSW = 0.1339

Unknown

BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.0065

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT5G13860

Predicted

Phenotypic Suppression

FSW = 0.0561

Unknown

ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G24840

Predicted

Synthetic Lethality

FSW = 0.0928

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT5G26250

Predicted

Phenotypic Enhancement

FSW = 0.0677

Unknown

SUGAR TRANSPORTER PUTATIVE
AT5G41700

Predicted

Phenotypic Enhancement

FSW = 0.0454

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT1G36730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0051

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 5 PUTATIVE / EIF-5 PUTATIVE
AT4G30510

Predicted

Affinity Capture-Western

FSW = 0.0222

Unknown

ATATG18B

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454