Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G31580 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN cultured cell CONTAINS InterPro DOMAIN/s tRNAHis guanylyltransferase (InterProIPR007537) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G323201) Has 640 Blast hits to 336 proteins in 155 species Archae - 65 Bacteria - 47 Metazoa - 212 Fungi - 176 Plants - 43 Viruses - 2 Other Eukaryotes - 95 (source NCBI BLink) )

9 Proteins interacs with AT2G31580
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G30260

Predicted

two hybrid

FSW = 0.0345

Unknown

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G06960

Predicted

two hybrid

two hybrid

FSW = 0.0214

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN U2B PUTATIVE / SPLICEOSOMAL PROTEIN PUTATIVE
AT3G06720

Predicted

two hybrid

FSW = 0.0213

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT2G37560

Predicted

two hybrid

interologs mapping

Affinity Capture-Western

FSW = 0.0193

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT3G60260

Predicted

two hybrid

FSW = 0.0585

Unknown

PHAGOCYTOSIS AND CELL MOTILITY PROTEIN ELMO1-RELATED
AT3G07300

Predicted

two hybrid

FSW = 0.0303

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR 2B FAMILY PROTEIN / EIF-2B FAMILY PROTEIN
AT5G41080

Predicted

two hybrid

FSW = 0.1170

Unknown

GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE FAMILY PROTEIN
AT3G02040

Predicted

two hybrid

FSW = 0.1303

Unknown

SRG3 (SENESCENCE-RELATED GENE 3) GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE/ PHOSPHORIC DIESTER HYDROLASE
AT1G02690

Predicted

two hybrid

FSW = 0.0187

Unknown

IMPA-6 (IMPORTIN ALPHA ISOFORM 6) BINDING / PROTEIN TRANSPORTER

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454