Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G31910 - ( ATCHX21 (CATION/H+ EXCHANGER 21) sodiumhydrogen antiporter )
18 Proteins interacs with AT2G31910Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G14420 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purification | FSW = 0.2691
| Class C:plastid | (S)-2-HYDROXY-ACID OXIDASE PEROXISOMAL PUTATIVE / GLYCOLATE OXIDASE PUTATIVE / SHORT CHAIN ALPHA-HYDROXY ACID OXIDASE PUTATIVE |
AT1G74710 | Predictedsynthetic growth defect | FSW = 0.1255
| Class C:plastid | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
AT4G30310 | PredictedAffinity Capture-Western | FSW = 0.2618
| Class C:plastid | RIBITOL KINASE PUTATIVE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0155
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT2G42590 | Predictedco-fractionationCo-fractionation | FSW = 0.0096
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G33370 | PredictedAffinity Capture-Westerntwo hybridtwo hybridReconstituted Complextwo hybridtwo hybridtwo hybridReconstituted Complextwo hybridCo-crystal StructureAffinity Capture-Western | FSW = 0.2782
| Unknown | 60S RIBOSOMAL PROTEIN L23 (RPL23B) |
AT3G52400 | Predictedco-fractionationCo-fractionation | FSW = 0.4325
| Unknown | SYP122 (SYNTAXIN OF PLANTS 122) SNAP RECEPTOR |
AT4G25780 | Predictedtwo hybridAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.0731
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT2G17800 | Predictedtwo hybrid | FSW = 0.0835
| Unknown | ARAC1 GTP BINDING |
AT5G62160 | Predictedco-fractionationCo-fractionationco-fractionationCo-fractionation | FSW = 0.4515
| Unknown | ATZIP12 (ZINC TRANSPORTER 12 PRECURSOR) CATION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER |
AT4G30800 | PredictedAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybridReconstituted Complextwo hybridtwo hybridtwo hybridtwo hybridAffinity Capture-MSAffinity Capture-Westerntwo hybridReconstituted Complex | FSW = 0.1428
| Unknown | 40S RIBOSOMAL PROTEIN S11 (RPS11B) |
AT1G20696 | Predictedtwo hybridtwo hybridAffinity Capture-WesternCo-purification | FSW = 0.0152
| Unknown | HMGB3 (HIGH MOBILITY GROUP B 3) DNA BINDING / CHROMATIN BINDING / STRUCTURAL CONSTITUENT OF CHROMATIN / TRANSCRIPTION FACTOR |
AT1G25155 | Predictedsynthetic growth defect | FSW = 0.1028
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT3G18030 | PredictedReconstituted Complextwo hybrid | FSW = 0.0426
| Unknown | ATHAL3A FMN BINDING / PHOSPHOPANTOTHENOYLCYSTEINE DECARBOXYLASE |
AT4G36050 | PredictedAffinity Capture-Western | FSW = 0.0339
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G10930 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Western | FSW = 0.5806
| Unknown | CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G50110 | PredictedAffinity Capture-MS | FSW = 0.0381
| Unknown | ATPEN3 (ARABIDOPSIS THALIANA PTEN 3) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE/ PROTEIN TYROSINE/SERINE/THREONINE PHOSPHATASE |
AT1G05580 | PredictedPhylogenetic profile method | FSW = 0.0803
| Unknown | ATCHX23 (CATION/H+ EXCHANGER 23) MONOVALENT CATIONPROTON ANTIPORTER/ SODIUMHYDROGEN ANTIPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454