Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G32160 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 19 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s N2227-like (InterProIPR012901) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G321701) Has 325 Blast hits to 315 proteins in 141 species Archae - 0 Bacteria - 0 Metazoa - 95 Fungi - 130 Plants - 30 Viruses - 0 Other Eukaryotes - 70 (source NCBI BLink) )
56 Proteins interacs with AT2G32160Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G20260 | PredictedPhenotypic Enhancement | FSW = 0.1000
| Unknown | HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM |
AT3G07590 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE |
AT3G62870 | Predictedtwo hybridsynthetic growth defect | FSW = 0.0228
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G74560 | PredictedSynthetic Lethality | FSW = 0.2762
| Unknown | NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING |
AT3G22890 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1738
| Unknown | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT4G33650 | PredictedSynthetic LethalitySynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1477
| Unknown | DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING |
AT3G48170 | PredictedPhenotypic Enhancement | FSW = 0.0868
| Unknown | ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE |
AT1G64190 | PredictedPhenotypic Enhancement | FSW = 0.1288
| Unknown | 6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0393
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT5G51820 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1478
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G48860 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1597
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE |
AT2G21540 | PredictedAffinity Capture-MS | FSW = 0.0257
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT5G23900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0373
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT1G04750 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.0811
| Unknown | VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.1323
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G36860 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0271
| Unknown | ZINC ION BINDING |
AT1G80050 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1726
| Unknown | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G02990 | Predictedtwo hybrid | FSW = 0.0166
| Unknown | ATHSFA1E DNA BINDING / TRANSCRIPTION FACTOR |
AT1G43700 | Predictedtwo hybrid | FSW = 0.0136
| Unknown | VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT2G18740 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE |
AT5G48870 | PredictedAffinity Capture-MS | FSW = 0.0113
| Unknown | SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING |
AT4G26910 | Predictedtwo hybrid | FSW = 0.0537
| Unknown | 2-OXOACID DEHYDROGENASE FAMILY PROTEIN |
AT1G75510 | Predictedtwo hybrid | FSW = 0.0079
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT3G07140 | Predictedtwo hybrid | FSW = 0.0818
| Unknown | GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN |
AT1G10550 | Predictedtwo hybrid | FSW = 0.0339
| Unknown | XTH33 HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE |
AT1G10210 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.0478
| Unknown | ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE |
AT1G27040 | PredictedPhenotypic Enhancement | FSW = 0.0331
| Unknown | NITRATE TRANSPORTER PUTATIVE |
AT1G35350 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.2800
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G43910 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2568
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G55060 | Predictedsynthetic growth defect | FSW = 0.0805
| Unknown | UBQ12 (UBIQUITIN 12) PROTEIN BINDING |
AT1G66590 | PredictedSynthetic LethalityPhenotypic Enhancementsynthetic growth defect | FSW = 0.0992
| Unknown | COX19 FAMILY PROTEIN |
AT1G66740 | PredictedPhenotypic Enhancement | FSW = 0.0034
| Unknown | SGA2 |
AT1G80710 | PredictedPhenotypic Suppression | FSW = 0.1062
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT1G52500 | PredictedSynthetic Lethality | FSW = 0.1433
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G38600 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | ACID PHOSPHATASE CLASS B FAMILY PROTEIN |
AT2G46710 | Predictedtwo hybrid | FSW = 0.0150
| Unknown | RAC GTPASE ACTIVATING PROTEIN PUTATIVE |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.1261
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G15460 | PredictedAffinity Capture-MS | FSW = 0.0038
| Unknown | BRIX DOMAIN-CONTAINING PROTEIN |
AT3G22290 | PredictedSynthetic Lethalitysynthetic growth defectPhenotypic Enhancement | FSW = 0.2201
| Unknown | UNKNOWN PROTEIN |
AT3G59540 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1387
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT3G61740 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1176
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G27960 | PredictedSynthetic Lethality | FSW = 0.1095
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
AT3G01100 | PredictedPhenotypic Enhancement | FSW = 0.0703
| Unknown | HYP1 (HYPOTHETICAL PROTEIN 1) |
AT3G18660 | PredictedPhenotypic Enhancement | FSW = 0.1290
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G24160 | PredictedPhenotypic Enhancement | FSW = 0.1106
| Unknown | HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN |
AT4G26230 | PredictedAffinity Capture-MS | FSW = 0.0208
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31B) |
AT5G01770 | PredictedPhenotypic Enhancement | FSW = 0.1350
| Unknown | RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING |
AT5G16170 | PredictedPhenotypic Enhancement | FSW = 0.0672
| Unknown | UNKNOWN PROTEIN |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.0547
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT5G60550 | Predictedsynthetic growth defect | FSW = 0.0666
| Unknown | GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE |
AT1G03050 | Predictedtwo hybrid | FSW = 0.0301
| Unknown | EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED |
AT3G58180 | Predictedtwo hybrid | FSW = 0.0362
| Unknown | PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN |
AT4G10130 | Predictedtwo hybrid | FSW = 0.0171
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT2G34570 | Predictedtwo hybrid | FSW = 0.0164
| Unknown | MEE21 (MATERNAL EFFECT EMBRYO ARREST 21) |
AT2G32170 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1075
| Unknown | LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321603) HAS 362 BLAST HITS TO 319 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 132 FUNGI - 130 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 75 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454