Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G32160 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 19 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s N2227-like (InterProIPR012901) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT2G321701) Has 325 Blast hits to 315 proteins in 141 species Archae - 0 Bacteria - 0 Metazoa - 95 Fungi - 130 Plants - 30 Viruses - 0 Other Eukaryotes - 70 (source NCBI BLink) )

56 Proteins interacs with AT2G32160
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G20260

Predicted

Phenotypic Enhancement

FSW = 0.1000

Unknown

HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM / HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES / PROTON-TRANSPORTING ATPASE ROTATIONAL MECHANISM
AT3G07590

Predicted

Affinity Capture-MS

FSW = 0.0182

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN D1 PUTATIVE / SNRNP CORE PROTEIN D1 PUTATIVE / SM PROTEIN D1 PUTATIVE
AT3G62870

Predicted

two hybrid

synthetic growth defect

FSW = 0.0228

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G74560

Predicted

Synthetic Lethality

FSW = 0.2762

Unknown

NRP1 (NAP1-RELATED PROTEIN 1) DNA BINDING / CHROMATIN BINDING / HISTONE BINDING
AT3G22890

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1738

Unknown

APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP)
AT4G33650

Predicted

Synthetic Lethality

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1477

Unknown

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT3G48170

Predicted

Phenotypic Enhancement

FSW = 0.0868

Unknown

ALDH10A9 3-CHLOROALLYL ALDEHYDE DEHYDROGENASE/ OXIDOREDUCTASE
AT1G64190

Predicted

Phenotypic Enhancement

FSW = 0.1288

Unknown

6-PHOSPHOGLUCONATE DEHYDROGENASE FAMILY PROTEIN
AT1G51040

Predicted

Affinity Capture-MS

FSW = 0.0393

Unknown

PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE
AT5G51820

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1478

Unknown

PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE
AT1G48860

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1597

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE PUTATIVE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE PUTATIVE / EPSP SYNTHASE PUTATIVE
AT2G21540

Predicted

Affinity Capture-MS

FSW = 0.0257

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT5G23900

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0373

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT1G04750

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0811

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT4G21680

Predicted

Phenotypic Enhancement

FSW = 0.1323

Unknown

PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT4G36860

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0271

Unknown

ZINC ION BINDING
AT1G80050

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1726

Unknown

APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER
AT3G02990

Predicted

two hybrid

FSW = 0.0166

Unknown

ATHSFA1E DNA BINDING / TRANSCRIPTION FACTOR
AT1G43700

Predicted

two hybrid

FSW = 0.0136

Unknown

VIP1 (VIRE2-INTERACTING PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION FACTOR
AT2G18740

Predicted

Affinity Capture-MS

FSW = 0.0200

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN E PUTATIVE / SNRNP-E PUTATIVE / SM PROTEIN E PUTATIVE
AT5G48870

Predicted

Affinity Capture-MS

FSW = 0.0113

Unknown

SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1) RNA BINDING
AT4G26910

Predicted

two hybrid

FSW = 0.0537

Unknown

2-OXOACID DEHYDROGENASE FAMILY PROTEIN
AT1G75510

Predicted

two hybrid

FSW = 0.0079

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT3G07140

Predicted

two hybrid

FSW = 0.0818

Unknown

GPI TRANSAMIDASE COMPONENT GPI16 SUBUNIT FAMILY PROTEIN
AT1G10550

Predicted

two hybrid

FSW = 0.0339

Unknown

XTH33 HYDROLASE ACTING ON GLYCOSYL BONDS / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS / XYLOGLUCANXYLOGLUCOSYL TRANSFERASE
AT1G10210

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.0478

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G27040

Predicted

Phenotypic Enhancement

FSW = 0.0331

Unknown

NITRATE TRANSPORTER PUTATIVE
AT1G35350

Predicted

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.2800

Unknown

LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK)
AT1G43910

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2568

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G55060

Predicted

synthetic growth defect

FSW = 0.0805

Unknown

UBQ12 (UBIQUITIN 12) PROTEIN BINDING
AT1G66590

Predicted

Synthetic Lethality

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0992

Unknown

COX19 FAMILY PROTEIN
AT1G66740

Predicted

Phenotypic Enhancement

FSW = 0.0034

Unknown

SGA2
AT1G80710

Predicted

Phenotypic Suppression

FSW = 0.1062

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G19910

Predicted

Affinity Capture-MS

FSW = 0.0139

Unknown

RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN
AT1G52500

Predicted

Synthetic Lethality

FSW = 0.1433

Unknown

ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE
AT2G38600

Predicted

Affinity Capture-MS

FSW = 0.0557

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT2G46710

Predicted

two hybrid

FSW = 0.0150

Unknown

RAC GTPASE ACTIVATING PROTEIN PUTATIVE
AT2G48100

Predicted

Synthetic Lethality

FSW = 0.1261

Unknown

EXONUCLEASE FAMILY PROTEIN
AT3G15460

Predicted

Affinity Capture-MS

FSW = 0.0038

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G22290

Predicted

Synthetic Lethality

synthetic growth defect

Phenotypic Enhancement

FSW = 0.2201

Unknown

UNKNOWN PROTEIN
AT3G59540Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1387

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT3G61740

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1176

Unknown

SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G27960

Predicted

Synthetic Lethality

FSW = 0.1095

Unknown

UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE
AT3G01100

Predicted

Phenotypic Enhancement

FSW = 0.0703

Unknown

HYP1 (HYPOTHETICAL PROTEIN 1)
AT3G18660

Predicted

Phenotypic Enhancement

FSW = 0.1290

Unknown

PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT4G24160

Predicted

Phenotypic Enhancement

FSW = 0.1106

Unknown

HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT4G26230

Predicted

Affinity Capture-MS

FSW = 0.0208

Unknown

60S RIBOSOMAL PROTEIN L31 (RPL31B)
AT5G01770

Predicted

Phenotypic Enhancement

FSW = 0.1350

Unknown

RAPTOR2 (RAPTOR2) BINDING / NUCLEOTIDE BINDING
AT5G16170

Predicted

Phenotypic Enhancement

FSW = 0.0672

Unknown

UNKNOWN PROTEIN
AT5G57890

Predicted

Affinity Capture-MS

FSW = 0.0547

Unknown

ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT5G60550

Predicted

synthetic growth defect

FSW = 0.0666

Unknown

GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2) KINASE
AT1G03050

Predicted

two hybrid

FSW = 0.0301

Unknown

EPSIN N-TERMINAL HOMOLOGY (ENTH) DOMAIN-CONTAINING PROTEIN / CLATHRIN ASSEMBLY PROTEIN-RELATED
AT3G58180

Predicted

two hybrid

FSW = 0.0362

Unknown

PBS LYASE HEAT-LIKE REPEAT-CONTAINING PROTEIN
AT4G10130

Predicted

two hybrid

FSW = 0.0171

Unknown

DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN
AT2G34570

Predicted

two hybrid

FSW = 0.0164

Unknown

MEE21 (MATERNAL EFFECT EMBRYO ARREST 21)
AT2G32170

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1075

Unknown

LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321603) HAS 362 BLAST HITS TO 319 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 132 FUNGI - 130 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 75 (SOURCE NCBI BLINK)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454