Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G32220 - ( 60S ribosomal protein L27 (RPL27A) )
31 Proteins interacs with AT2G32220Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G63400 | Predictedbiochemical | FSW = 0.0218
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0216
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT2G45200 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.0451
| Unknown | GOS12 (GOLGI SNARE 12) SNARE BINDING |
AT3G13080 | Predictedinterologs mappinginterologs mapping | FSW = 0.0852
| Unknown | ATMRP3 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / CHLOROPHYLL CATABOLITE TRANSPORTER/ GLUTATHIONE S-CONJUGATE-EXPORTING ATPASE |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0254
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT3G20550 | Predictedco-fractionationCo-fractionation | FSW = 0.0457
| Unknown | DDL (DAWDLE) |
AT1G19660 | Predictedinterologs mappingsynthetic growth defectsynthetic growth defectinterologs mapping | FSW = 0.1201
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT3G57050 | PredictedAffinity Capture-Western | FSW = 0.0264
| Unknown | CBL (CYSTATHIONINE BETA-LYASE) CYSTATHIONINE BETA-LYASE |
AT1G01920 | Predictedtwo hybrid | FSW = 0.0941
| Unknown | SET DOMAIN-CONTAINING PROTEIN |
AT5G53480 | Predictedinterologs mapping | FSW = 0.0538
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT2G45710 | Predictedsynthetic growth defectinterologs mappinginterologs mappingAffinity Capture-Westernsynthetic growth defect | FSW = 0.2207
| Unknown | 40S RIBOSOMAL PROTEIN S27 (RPS27A) |
AT4G19690 | Predictedco-fractionationCo-fractionation | FSW = 0.0729
| Unknown | IRT1 (IRON-REGULATED TRANSPORTER 1) CADMIUM ION TRANSMEMBRANE TRANSPORTER/ COPPER UPTAKE TRANSMEMBRANE TRANSPORTER/ IRON ION TRANSMEMBRANE TRANSPORTER/ MANGANESE ION TRANSMEMBRANE TRANSPORTER/ ZINC ION TRANSMEMBRANE TRANSPORTER |
AT3G22230 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2079
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27B) |
AT4G15000 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0483
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27C) |
AT5G47100 | Predictedinterologs mappinginterologs mappinginterologs mapping | FSW = 0.0985
| Unknown | CBL9 CALCIUM ION BINDING |
AT2G35690 | Predictedtwo hybrid | FSW = 0.0307
| Unknown | ACX5 (ACYL-COA OXIDASE 5) FAD BINDING / ACYL-COA DEHYDROGENASE/ ACYL-COA OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT4G13980 | Predictedbiochemical | FSW = 0.0088
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT5G61000 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0593
| Unknown | REPLICATION PROTEIN PUTATIVE |
AT2G47510 | Predictedsynthetic growth defectinterologs mappingsynthetic growth defect | FSW = 0.0955
| Unknown | FUM1 (FUMARASE 1) CATALYTIC/ FUMARATE HYDRATASE |
AT2G14610 | Predictedinterologs mappinginterologs mapping | FSW = 0.2070
| Unknown | PR1 (PATHOGENESIS-RELATED GENE 1) |
AT4G33730 | Predictedbiochemical | FSW = 0.0114
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT4G26840 | PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
AT5G48655 | Predictedtwo hybrid | FSW = 0.0277
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT5G16260 | Predictedtwo hybrid | FSW = 0.0711
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G05830 | Predictedtwo hybrid | FSW = 0.0190
| Unknown | ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2) DNA BINDING / HISTONE METHYLTRANSFERASE(H3-K4 SPECIFIC) |
AT3G62770 | Predictedinterologs mappingAffinity Capture-WesternSynthetic Rescue | FSW = 0.0828
| Unknown | ATATG18A |
AT5G26250 | PredictedAffinity Capture-MS | FSW = 0.0134
| Unknown | SUGAR TRANSPORTER PUTATIVE |
AT5G38890 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0159
| Unknown | EXORIBONUCLEASE-RELATED |
AT5G44740 | Predictedbiochemical | FSW = 0.0180
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT3G04710 | PredictedSynthetic Rescue | FSW = 0.0351
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G29070 | Predictedinterologs mapping | FSW = 0.0635
| Unknown | PROTEIN TRANSMEMBRANE TRANSPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454