Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G32720 - ( CB5-B (CYTOCHROME B5 ISOFORM B) heme binding )
15 Proteins interacs with AT2G32720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G47120 | Experimentalconfocal microscopyprotein complementation assayfluorescence acceptor donor pairtwo hybridsplit-reporter assay | FSW = 0.2506
| Unknown | ATBI1 (BAX INHIBITOR 1) |
AT4G36220 | Experimentalprotein complementation assaytwo hybrid | FSW = 0.0426
| Class D:plastid (p = 0.78) | FAH1 (FERULIC ACID 5-HYDROXYLASE 1) FERULATE 5-HYDROXYLASE/ MONOOXYGENASE |
AT2G34770 | Experimental | FSW = 0.0213
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G20870 | Experimentalconfocal microscopyfluorescence acceptor donor pairprotein complementation assaytwo hybrid | FSW = 0.1185
| Unknown | FAH2 (FATTY ACID HYDROXYLASE 2) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
AT4G35450 | Experimentaltwo hybrid | FSW = 0.0247
| Unknown | AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) PROTEIN BINDING |
AT5G02500 | PredictedAffinity Capture-Western | FSW = 0.0952
| Unknown | HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) ATP BINDING |
AT5G53560 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2667
| Unknown | CB5-E (CYTOCHROME B5 ISOFORM E) HEME BINDING |
AT4G23430 | PredictedSynthetic Lethality | FSW = 0.0105
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT5G16820 | PredictedAffinity Capture-Western | FSW = 0.0696
| Unknown | HSF3 (HEAT SHOCK FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G14980 | PredictedAffinity Capture-Westerntwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridAffinity Capture-MSCo-purificationReconstituted Complexco-fractionationCo-fractionation | FSW = 0.3551
| Unknown | PHD FINGER TRANSCRIPTION FACTOR PUTATIVE |
AT5G48810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2462
| Unknown | CB5-D (CYTOCHROME B5 ISOFORM D) HEME BINDING |
AT4G32140 | PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Western | FSW = 0.2125
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN ENDOMEMBRANE SYSTEM MEMBRANE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF6 TRANSMEMBRANE (INTERPROIPR000620) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS MEMBRANE PROTEIN (TAIRAT3G070801) HAS 1078 BLAST HITS TO 1078 PROTEINS IN 273 SPECIES ARCHAE - 20 BACTERIA - 294 METAZOA - 244 FUNGI - 147 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 332 (SOURCE NCBI BLINK) |
AT2G32830 | PredictedAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.1600
| Unknown | PHT5 INORGANIC PHOSPHATE TRANSMEMBRANE TRANSPORTER/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G09640 | PredictedAffinity Capture-Western | FSW = 0.0829
| Unknown | APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE |
AT2G46650 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0499
| Unknown | CB5-C (CYTOCHROME B5 ISOFORM C) HEME BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454