Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G32730 - ( 26S proteasome regulatory subunit putative )
51 Proteins interacs with AT2G32730Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G51260 | PredictedAffinity Capture-MS | FSW = 0.3044
| Unknown | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G42020 | Predictedtwo hybrid | FSW = 0.0114
| Unknown | BIP2 ATP BINDING |
AT5G35590 | PredictedAffinity Capture-MS | FSW = 0.1765
| Unknown | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G14800 | PredictedAffinity Capture-MS | FSW = 0.3181
| Unknown | PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G31300 | PredictedAffinity Capture-MS | FSW = 0.2080
| Unknown | PBA1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13710 | PredictedPhenotypic Suppression | FSW = 0.0084
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT3G45770 | Predictedtwo hybridtwo hybrid | FSW = 0.0224
| Unknown | OXIDOREDUCTASE ZINC-BINDING DEHYDROGENASE FAMILY PROTEIN |
AT5G46110 | Predictedtwo hybrid | FSW = 0.0440
| Unknown | APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) ANTIPORTER/ TRIOSE-PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT3G27100 | Predictedtwo hybrid | FSW = 0.0189
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST ENVELOPE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSCRIPTION FACTOR ENHANCER OF YELLOW 2 (INTERPROIPR018783) HAS 197 BLAST HITS TO 197 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 8 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK) |
AT5G56030 | Predictedsynthetic growth defectinterologs mapping | FSW = 0.0717
| Unknown | HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0377
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0143
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT1G75990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5065
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT1G04810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5503
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT2G20580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSCo-purification | FSW = 0.3158
| Unknown | RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) BINDING / ENZYME REGULATOR |
AT1G53750 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3128
| Unknown | RPT1A (REGULATORY PARTICLE TRIPLE-A 1A) ATPASE |
AT5G19990 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2675
| Unknown | RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A) ATPASE |
AT5G42790 | PredictedAffinity Capture-MS | FSW = 0.3584
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G24820 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4042
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN7) |
AT1G57720 | PredictedAffinity Capture-MS | FSW = 0.0450
| Unknown | ELONGATION FACTOR 1B-GAMMA PUTATIVE / EEF-1B GAMMA PUTATIVE |
AT2G26300 | PredictedSynthetic Rescue | FSW = 0.0119
| Unknown | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT3G05530 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4509
| Unknown | RPT5A (REGULATORY PARTICLE TRIPLE-A ATPASE 5A) ATPASE/ CALMODULIN BINDING |
AT1G63780 | PredictedAffinity Capture-MS | FSW = 0.0301
| Unknown | IMP4 |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0054
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G79750 | PredictedAffinity Capture-MS | FSW = 0.0884
| Unknown | ATNADP-ME4 (NADP-MALIC ENZYME 4) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR |
AT5G58290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3843
| Unknown | RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) ATPASE |
AT5G38470 | PredictedAffinity Capture-MS | FSW = 0.1683
| Unknown | DNA REPAIR PROTEIN RAD23 PUTATIVE |
AT5G56670 | Predictedtwo hybrid | FSW = 0.0186
| Unknown | 40S RIBOSOMAL PROTEIN S30 (RPS30C) |
AT2G26590 | Predictedtwo hybridtwo hybridCo-expression | FSW = 0.0183
| Unknown | ADHESION REGULATING MOLECULE FAMILY |
AT5G45620 | PredictedAffinity Capture-MS | FSW = 0.0867
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT1G02080 | PredictedAffinity Capture-MS | FSW = 0.0216
| Unknown | TRANSCRIPTIONAL REGULATOR-RELATED |
AT1G64520 | PredictedAffinity Capture-MSAffinity Capture-MSSynthetic LethalityAffinity Capture-WesternAffinity Capture-MSSynthetic Lethality | FSW = 0.3732
| Unknown | RPN12A (REGULATORY PARTICLE NON-ATPASE 12A) PEPTIDASE |
AT2G03430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3961
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G29150 | PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MS | FSW = 0.2706
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G51710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2581
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT1G80410 | PredictedAffinity Capture-MS | FSW = 0.0447
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G39770 | PredictedAffinity Capture-MS | FSW = 0.0753
| Unknown | CYT1 (CYTOKINESIS DEFECTIVE 1) MANNOSE-1-PHOSPHATE GUANYLYLTRANSFERASE/ NUCLEOTIDYLTRANSFERASE |
AT3G01090 | Predictedbiochemical | FSW = 0.0272
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G04710 | PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT3G11270 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4292
| Unknown | MEE34 (MATERNAL EFFECT EMBRYO ARREST 34) |
AT3G12670 | PredictedAffinity Capture-MS | FSW = 0.1239
| Unknown | EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC |
AT3G13330 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1195
| Unknown | BINDING |
AT4G19006 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4780
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE (RPN9) |
AT4G29040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4211
| Unknown | RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A) ATPASE |
AT4G38630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSReconstituted Complex | FSW = 0.1979
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G09900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3969
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G22840 | Predictedbiochemical | FSW = 0.0262
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G23540 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3820
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT PUTATIVE |
AT5G66640 | Predictedbiochemical | FSW = 0.0032
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT4G04210 | PredictedPhenotypic Enhancement | FSW = 0.0087
| Unknown | PUX4 PROTEIN BINDING |
AT5G43010 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4685
| Unknown | RPT4A ATPASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454