Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G32950 - ( COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) protein binding / ubiquitin-protein ligase )
47 Proteins interacs with AT2G32950Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G35160 | Experimentalpull down | FSW = 0.0141
| Class A:nucleuscytosolClass B:plasma membranecytoskeleton | GF14 PHI (GF14 PROTEIN PHI CHAIN) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G18790 | Experimentaltwo hybridtwo hybridcoimmunoprecipitation | FSW = 0.0963
| Class A:nucleuscytosolClass D:nucleus (p = 0.78) | PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT1G09570 | ExperimentalReconstituted ComplexbiochemicalAffinity Capture-Westernin vitroaffinity technology | FSW = 0.0952
| Class A:nucleuscytosol | PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT4G08920 | Experimentaltwo hybridtwo hybridconfocal microscopytwo hybridReconstituted ComplexAffinity Capture-Westerncoimmunoprecipitationaffinity technologyin vitro | FSW = 0.0667
| Class A:nucleuscytosol | CRY1 (CRYPTOCHROME 1) ATP BINDING / BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION/ PROTEIN KINASE |
AT2G24790 | Experimentaltwo hybrid | FSW = 0.0186
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | COL3 (CONSTANS-LIKE 3) PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G11260 | Experimentaltwo hybridReconstituted Complextwo hybridtwo hybridtwo hybridpull downbiochemicalReconstituted Complexin vitroin vitro | FSW = 0.2759
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | HY5 (ELONGATED HYPOCOTYL 5) DNA BINDING / DOUBLE-STRANDED DNA BINDING / TRANSCRIPTION FACTOR |
AT5G15850 | Experimentalmolecular sieving | FSW = 0.1905
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | COL1 (CONSTANS-LIKE 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT3G54620 | Experimentalenzymatic study | FSW = 0.0441
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | BZIP25 (BASIC LEUCINE ZIPPER 25) PROTEIN HETERODIMERIZATION/ TRANSCRIPTION FACTOR |
AT3G17609 | Experimentaltwo hybridcoimmunoprecipitation | FSW = 0.0703
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | HYH (HY5-HOMOLOG) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G22770 | ExperimentalPhenotypic Suppressionprotein complementation assaysplit-reporter assay | FSW = 0.0586
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | GI (GIGANTEA) |
AT5G15840 | Experimentalpull downtwo hybridReconstituted Complexfluorescence acceptor donor pairbiochemicalin vitro | FSW = 0.1203
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | CO (CONSTANS) TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT1G02340 | Experimentaltwo hybridcoimmunoprecipitationin vitrotwo hybridAffinity Capture-Westerntwo hybridbiochemicalenzymatic studypull downpull downconfocal microscopyReconstituted ComplexAffinity Capture-Westerncoimmunoprecipitationin vitroaffinity technologyin vitro | FSW = 0.1620
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | HFR1 (LONG HYPOCOTYL IN FAR-RED) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT3G62420 | Experimental | FSW = 0.0513
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53) DNA BINDING / PROTEIN HETERODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT2G46340 | Experimentalaffinity technologyin vitroco-fractionationCo-fractionationaffinity technologyaffinity technologyAffinity Capture-WesternAffinity Capture-WesternReconstituted Complexmolecular sievingconfocal microscopyco-fractionationCo-fractionationtwo hybridReconstituted ComplexAffinity Capture-MSin vitro | FSW = 0.2279
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | SPA1 (SUPPRESSOR OF PHYA-105 1) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT4G18960 | Experimental | FSW = 0.0097
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | AG (AGAMOUS) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G25560 | Experimentalpull downconfocal microscopyReconstituted ComplexAffinity Capture-Westernbiochemicalin vitroaffinity technology | FSW = 0.0385
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | ATMYB18 (MYB DOMAIN PROTEIN 18) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G36890 | Experimental | FSW = 0.0800
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G10180 | Experimentalco-fractionationCo-fractionation | FSW = 0.2078
| Class A:nucleusClass B:cytosol | DET1 (DE-ETIOLATED 1) CATALYTIC |
AT1G04400 | ExperimentalPhenotypic Suppressiontwo hybridAffinity Capture-Westerncoimmunoprecipitation | FSW = 0.0947
| Class A:nucleusClass B:cytosol | CRY2 (CRYPTOCHROME 2) BLUE LIGHT PHOTORECEPTOR/ PROTEIN HOMODIMERIZATION |
AT3G07560 | Experimental | FSW = 0.0152
| Class A:cytosolClass B:peroxisomenucleusClass D:nucleus (p = 0.78) | PEX13 (PEROXIN 13) PROTEIN BINDING |
AT5G41790 | ExperimentalReconstituted Complexin vitrofar western blotting | FSW = 0.0060
| Class B:vacuoleplastidnucleuscytosolClass D:nucleus (p = 0.78) | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT4G27430 | ExperimentalReconstituted Complex | FSW = 0.0180
| Class B:vacuoleplasma membranenucleuscytosolClass D:nucleus (p = 0.78) | CIP7 (COP1-INTERACTING PROTEIN 7) TRANSCRIPTION ACTIVATOR |
AT5G24020 | Experimental | FSW = 0.0356
| Class B:plastidnucleuscytosol | MIND ATPASE/ CALCIUM-DEPENDENT ATPASE/ PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT1G22280 | Experimental | FSW = 0.1008
| Class B:plasma membranenucleuscytosolClass D:nucleus (p = 0.78) | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT4G21100 | ExperimentalReconstituted ComplexAffinity Capture-Western | FSW = 0.1895
| Class B:nucleusextracellularcytosolClass D:nucleus (p = 0.78) | DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) DAMAGED DNA BINDING / PROTEIN BINDING |
AT5G56280 | Experimentalmolecular sieving | FSW = 0.0993
| Class D:nucleus (p = 0.78) | CSN6A |
AT4G05420 | ExperimentalReconstituted Complex | FSW = 0.1916
| Class D:nucleus (p = 0.78) | DDB1A (DAMAGED DNA BINDING PROTEIN 1A) DNA BINDING / PROTEIN BINDING |
AT4G16110 | Experimentalconfocal microscopy | FSW = 0.0200
| Class D:nucleus (p = 0.78) | ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G78600 | Experimentalenzymatic studyconfocal microscopy | FSW = 0.1572
| Class D:nucleus (p = 0.78) | LZF1 (LIGHT-REGULATED ZINC FINGER PROTEIN 1) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G31380 | Experimentalfluorescence acceptor donor pairfluorescence acceptor donor pairbiochemicaltwo hybridin vitro | FSW = 0.1176
| Class D:nucleus (p = 0.78) | STH PROTEIN DOMAIN SPECIFIC BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G06040 | Experimentaltwo hybrid | FSW = 0.0533
| Class D:nucleus (p = 0.78) | STO (SALT TOLERANCE) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G75540 | Experimentalconfocal microscopy | FSW = 0.1008
| Class D:nucleus (p = 0.78) | STH2 (SALT TOLERANCE HOMOLOG2) TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT5G14250 | Experimentalmolecular sieving | FSW = 0.0889
| Class D:nucleus (p = 0.78) | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13) PROTEIN BINDING |
AT5G37190 | ExperimentalReconstituted Complex | FSW = 0.0183
| Class D:nucleus (p = 0.78) | CIP4 (COP1-INTERACTING PROTEIN 4) TRANSCRIPTION COFACTOR |
AT2G40030 | Experimental | FSW = 0.0356
| Class D:nucleus (p = 0.78) | NRPD1B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT4G02560 | ExperimentalPhenotypic Suppression | FSW = 0.0399
| Class D:nucleus (p = 0.78) | LD (LUMINIDEPENDENS) TRANSCRIPTION FACTOR |
AT2G25930 | Experimentalaffinity technologyAffinity Capture-Westerntwo hybridbiochemicalprotein complementation assaysplit-reporter assayin vitro | FSW = 0.1782
| Class D:nucleus (p = 0.78) | ELF3 (EARLY FLOWERING 3) PROTEIN C-TERMINUS BINDING / TRANSCRIPTION FACTOR |
AT3G13550 | ExperimentalAffinity Capture-Westerntwo hybridAffinity Capture-Westerntwo hybrid | FSW = 0.0713
| Unknown | FUS9 (FUSCA 9) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G20050 | Experimentaltwo hybridReconstituted Complexin vitro | FSW = 0.0056
| Unknown | ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
AT5G64920 | Experimentaltwo hybridin vitroReconstituted ComplexReconstituted Complexpull downpull downtwo hybridtwo hybrid | FSW = 0.0392
| Unknown | CIP8 (COP1-INTERACTING PROTEIN 8) PROTEIN BINDING / ZINC ION BINDING |
AT3G15354 | Experimentalaffinity technologyAffinity Capture-WesternAffinity Capture-Western | FSW = 0.2467
| Unknown | SPA3 (SPA1-RELATED 3) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT1G53090 | Experimentalaffinity technologyAffinity Capture-WesternAffinity Capture-Western | FSW = 0.2842
| Unknown | SPA4 (SPA1-RELATED 4) PROTEIN BINDING / SIGNAL TRANSDUCER |
AT3G49470 | Experimental | FSW = 0.0160
| Unknown | NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2) |
AT3G16130 | Experimental | FSW = 0.0533
| Unknown | ROPGEF13 RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
AT1G53720 | Experimentalpull down | FSW = 0.0221
| Unknown | CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT5G46210 | ExperimentalAffinity Capture-WesternAffinity Capture-Westernaffinity technology | FSW = 0.1576
| Unknown | CUL4 (CULLIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G11110 | ExperimentalAffinity Capture-Westernaffinity technology | FSW = 0.3567
| Unknown | SPA2 (SPA1-RELATED 2) PROTEIN BINDING / SIGNAL TRANSDUCER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454