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AT2G33120 - ( SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) )

73 Proteins interacs with AT2G33120

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT5G15090	Predicted Affinity Capture-MS	FSW = 0.0108	Class C: vacuole unclear plasma membrane	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT4G32150	Predicted Phylogenetic profile method	FSW = 0.2169	Class C: vacuole plasma membrane	ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)
AT3G56190	Predicted Reconstituted Complex Affinity Capture-Western interologs mapping interaction prediction	FSW = 0.0632	Class C: vacuole plasma membrane	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN
AT1G12360	Predicted Affinity Capture-Western interologs mapping	FSW = 0.0340	Class C: vacuole plasma membrane	KEU (KEULE) PROTEIN TRANSPORTER
AT1G54270	Predicted Affinity Capture-MS	FSW = 0.0023	Class C: vacuole plasma membrane	EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT5G22360	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.1952	Class C: vacuole	ATVAMP714 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 714)
AT5G46860	Predicted Affinity Capture-Western Synthetic Lethality	FSW = 0.0650	Class C: vacuole	VAM3 SNAP RECEPTOR
AT2G25340	Predicted Gene neighbors method Phylogenetic profile method	FSW = 0.1701	Class C: vacuole	ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)
AT5G11150	Predicted Gene fusion method Phylogenetic profile method	FSW = 0.1898	Class C: vacuole	ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713)
AT4G04910	Predicted Affinity Capture-Western	FSW = 0.0574	Class C: vacuole	NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G62870	Predicted synthetic growth defect	FSW = 0.0308	Class C: vacuole	60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G77590	Predicted Dosage Growth Defect	FSW = 0.0167	Class C: unclear	LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9) LONG-CHAIN-FATTY-ACID-COA LIGASE
AT3G19980	Predicted interologs mapping	FSW = 0.0150	Class C: unclear	ATFYPP3 (FLOWER-SPECIFIC PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G08530	Predicted Synthetic Lethality	FSW = 0.0212	Class C: plasma membrane	CLATHRIN HEAVY CHAIN PUTATIVE
AT1G04760	Predicted Phylogenetic profile method	FSW = 0.2038	Class C: plasma membrane	ATVAMP726
AT5G08080	Predicted interologs mapping interaction prediction Enriched domain pair	FSW = 0.0781	Class C: plasma membrane	SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR
AT3G03800	Predicted Affinity Capture-Western Affinity Capture-Western interologs mapping	FSW = 0.0469	Class C: plasma membrane	SYP131 (SYNTAXIN OF PLANTS 131) SNAP RECEPTOR
AT5G41060	Predicted Affinity Capture-MS	FSW = 0.0391	Class C: plasma membrane	ZINC FINGER (DHHC TYPE) FAMILY PROTEIN
AT1G04750	Predicted Phylogenetic profile method	FSW = 0.1538	Class C: plasma membrane	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT5G40370	Predicted Affinity Capture-MS	FSW = 0.0171	Class C: plasma membrane	GLUTAREDOXIN PUTATIVE
AT4G35950	Predicted interologs mapping	FSW = 0.0073	Class C: plasma membrane	ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING
AT4G12120	Predicted interaction prediction	FSW = 0.0471	Class C: plasma membrane	SEC1B PROTEIN TRANSPORTER
AT4G15780	Predicted Phylogenetic profile method	FSW = 0.2545	Class C: plasma membrane	ATVAMP724
AT5G09660	Predicted Affinity Capture-MS	FSW = 0.0258	Unknown	PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT3G23940	Predicted Affinity Capture-MS	FSW = 0.0403	Unknown	DEHYDRATASE FAMILY
AT1G10070	Predicted Affinity Capture-MS	FSW = 0.0847	Unknown	ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT5G25400	Predicted Affinity Capture-MS	FSW = 0.0739	Unknown	PHOSPHATE TRANSLOCATOR-RELATED
AT5G27720	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0999	Unknown	EMB1644 (EMBRYO DEFECTIVE 1644)
AT5G47630	Predicted Affinity Capture-MS	FSW = 0.0119	Unknown	MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT1G28490	Predicted Affinity Capture-Western synthetic growth defect interaction prediction Enriched domain pair	FSW = 0.0972	Unknown	SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR
AT5G02730	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0677	Unknown	ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT2G14580	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0310	Unknown	ATPRB1
AT1G27980	Predicted interologs mapping	FSW = 0.0391	Unknown	DPL1 CARBOXY-LYASE/ CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING
AT3G05710	Predicted synthetic growth defect	FSW = 0.0363	Unknown	SYP43 (SYNTAXIN OF PLANTS 43) SNAP RECEPTOR
AT2G33110	Predicted Phylogenetic profile method	FSW = 0.0702	Unknown	ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)
AT3G54300	Predicted Phylogenetic profile method	FSW = 0.1488	Unknown	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)
AT2G38960	Predicted Affinity Capture-MS	FSW = 0.0094	Unknown	AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING
AT1G15960	Predicted Affinity Capture-MS	FSW = 0.0691	Unknown	NRAMP6 INORGANIC ANION TRANSMEMBRANE TRANSPORTER/ METAL ION TRANSMEMBRANE TRANSPORTER
AT4G10920	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0054	Unknown	KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G60490	Predicted Synthetic Lethality	FSW = 0.0274	Unknown	ATVPS34 1-PHOSPHATIDYLINOSITOL-3-KINASE/ BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR
AT1G09270	Predicted Affinity Capture-MS	FSW = 0.0587	Unknown	IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G25510	Predicted Affinity Capture-MS	FSW = 0.0952	Unknown	ASPARTYL PROTEASE FAMILY PROTEIN
AT1G26140	Predicted Affinity Capture-MS	FSW = 0.1677	Unknown	UNKNOWN PROTEIN
AT1G31170	Predicted Affinity Capture-MS interologs mapping Affinity Capture-MS	FSW = 0.0449	Unknown	SRX (SULFIREDOXIN) DNA BINDING / OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS
AT1G47830	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0532	Unknown	CLATHRIN COAT ASSEMBLY PROTEIN PUTATIVE
AT1G66810	Predicted Affinity Capture-MS	FSW = 0.1832	Unknown	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT1G70290	Predicted Affinity Capture-MS	FSW = 0.0181	Unknown	ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G03040	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0049	Unknown	TRANSMEMBRANE PROTEIN-RELATED
AT2G17620	Predicted Affinity Capture-MS	FSW = 0.0265	Unknown	CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G17980	Predicted Affinity Capture-Western	FSW = 0.0352	Unknown	ATSLY1 PROTEIN TRANSPORTER
AT2G31020	Predicted Affinity Capture-MS	FSW = 0.0313	Unknown	ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT2G33560	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0230	Unknown	SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G37550	Predicted Synthetic Lethality	FSW = 0.0137	Unknown	AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING
AT2G38490	Predicted Affinity Capture-MS	FSW = 0.0474	Unknown	CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G13060	Predicted Affinity Capture-MS	FSW = 0.0156	Unknown	ECT5 FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S YT521-B-LIKE PROTEIN (INTERPROIPR007275) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS ECT2 PROTEIN BINDING (TAIRAT3G134601) HAS 1007 BLAST HITS TO 965 PROTEINS IN 147 SPECIES ARCHAE - 0 BACTERIA - 8 METAZOA - 528 FUNGI - 103 PLANTS - 235 VIRUSES - 0 OTHER EUKARYOTES - 133 (SOURCE NCBI BLINK)
AT3G13235	Predicted Affinity Capture-Western Affinity Capture-Western	FSW = 0.0666	Unknown	UBIQUITIN FAMILY PROTEIN
AT3G18660	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0618	Unknown	PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G27580	Predicted Affinity Capture-MS	FSW = 0.0929	Unknown	ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G55020	Predicted Affinity Capture-MS	FSW = 0.1357	Unknown	RABGAP/TBC DOMAIN-CONTAINING PROTEIN
AT4G04885	Predicted Affinity Capture-MS	FSW = 0.0134	Unknown	PCFS4 (PCF11P-SIMILAR PROTEIN 4) ZINC ION BINDING
AT4G04955	Predicted Affinity Capture-MS	FSW = 0.0223	Unknown	ATALN (ARABIDOPSIS ALLANTOINASE) ALLANTOINASE/ HYDROLASE
AT4G14670	Predicted Affinity Capture-MS	FSW = 0.1324	Unknown	CLPB2 ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G30510	Predicted Affinity Capture-MS	FSW = 0.0432	Unknown	ATATG18B
AT4G37840	Predicted Affinity Capture-MS	FSW = 0.0282	Unknown	HKL3 (HEXOKINASE-LIKE 3) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE
AT5G13150	Predicted Affinity Capture-MS	FSW = 0.0429	Unknown	ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING
AT5G14050	Predicted Affinity Capture-MS	FSW = 0.0135	Unknown	TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G14850	Predicted Affinity Capture-MS	FSW = 0.0750	Unknown	MANNOSYLTRANSFERASE PUTATIVE
AT5G20560	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1363	Unknown	BETA-13-GLUCANASE PUTATIVE
AT5G21170	Predicted Affinity Capture-MS	FSW = 0.0097	Unknown	5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE
AT5G26110	Predicted Affinity Capture-MS	FSW = 0.0195	Unknown	ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT5G38890	Predicted Affinity Capture-MS	FSW = 0.0269	Unknown	EXORIBONUCLEASE-RELATED
AT3G06460	Predicted Synthetic Rescue	FSW = 0.0214	Unknown	GNS1/SUR4 MEMBRANE FAMILY PROTEIN
AT5G06140	Predicted Affinity Capture-Western	FSW = 0.0563	Unknown	SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

AtPIN will be upgraded. Please send your suggestions here

AT2G33120 - ( SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) )

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Downloads

Fasta sequences:

Quick help

FSW