Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G33310 - ( IAA13 transcription factor )

5 Proteins interacs with AT2G33310
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G37020

Experimental

FSW = 0.1569

Class D:

nucleus (p = 0.78)

ARF8 (AUXIN RESPONSE FACTOR 8) TRANSCRIPTION FACTOR
AT1G19850

Experimental

FSW = 0.2395

Class D:

nucleus (p = 0.78)

MP (MONOPTEROS) TRANSCRIPTION FACTOR
AT5G20730

Experimental

FSW = 0.1442

Class D:

nucleus (p = 0.78)

NPH4 (NON-PHOTOTROPHIC HYPOCOTYL) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR
AT1G04550

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.2622

Unknown

IAA12 (AUXIN-INDUCED PROTEIN 12) TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR
AT4G28640

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.0937

Unknown

IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11) TRANSCRIPTION FACTOR

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454