Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G33610 - ( ATSWI3B (SWITCH SUBUNIT 3) DNA binding )

31 Proteins interacs with AT2G33610
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G34430

Experimental

two hybrid

FSW = 0.0507

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G46020

Experimental

two hybrid

FSW = 0.0901

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

TRANSCRIPTION REGULATORY PROTEIN SNF2 PUTATIVE
AT3G17590

Experimental

two hybrid

two hybrid

FSW = 0.1934

Class A:

nucleus

Class D:

plastid (p = 0.78)

BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING
AT1G21700

Experimental

pull down

two hybrid

two hybrid

FSW = 0.1294

Class A:

nucleus

Class D:

nucleus (p = 0.78)

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT2G47620

Experimental

two hybrid

FSW = 0.0746

Class A:

nucleus

Class D:

nucleus (p = 0.78)

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT2G28290

Experimental

pull down

FSW = 0.0861

Class A:

nucleus

Class D:

nucleus (p = 0.78)

SYD (SPLAYED) ATPASE/ CHROMATIN BINDING
AT4G16280

Experimental

two hybrid

FSW = 0.1502

Unknown

FCA RNA BINDING
AT5G04510

Experimental

pull down

FSW = 0.0105

Unknown

PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE
AT4G26080

Experimental

FSW = 0.0138

Unknown

ABI1 (ABA INSENSITIVE 1) CALCIUM ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G57050

Experimental

FSW = 0.0362

Unknown

ABI2 (ABA INSENSITIVE 2) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G72770

Experimental

FSW = 0.0224

Unknown

HAB1 (HOMOLOGY TO ABI1) CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G11410

Experimental

FSW = 0.0290

Unknown

PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G24190

Predicted

Affinity Capture-Western

FSW = 0.0988

Class C:

nucleus

SHD (SHEPHERD) ATP BINDING / UNFOLDED PROTEIN BINDING
AT3G01890

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2839

Class C:

nucleus

SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN
AT3G44530

Predicted

Affinity Capture-Western

interaction prediction

FSW = 0.0653

Class C:

nucleus

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G03415

Predicted

Phenotypic Enhancement

Co-expression

FSW = 0.0556

Class C:

nucleus

DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION
AT5G19310

Predicted

interaction prediction

interologs mapping

FSW = 0.2335

Class C:

nucleus

HOMEOTIC GENE REGULATOR PUTATIVE
AT3G06010

Predicted

Co-purification

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Co-purification

Affinity Capture-Western

Affinity Capture-MS

two hybrid

Co-expression

FSW = 0.3678

Class C:

nucleus

ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT4G35800

Predicted

in vitro

in vivo

Co-expression

FSW = 0.0119

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G01320

Predicted

Phenotypic Enhancement

FSW = 0.0494

Unknown

ABC TRANSPORTER FAMILY PROTEIN
AT1G06390

Predicted

Phenotypic Suppression

FSW = 0.0644

Unknown

GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE
AT5G54260

Predicted

Affinity Capture-Western

FSW = 0.0229

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G70060Predicted

Reconstituted Complex

FSW = 0.0889

Unknown

SNL4 (SIN3-LIKE 4)
AT3G51270

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0881

Unknown

ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT2G28820Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0635

Unknown

ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE
AT5G38110

Predicted

Phenotypic Suppression

Co-expression

FSW = 0.0329

Unknown

ASF1B (ANTI- SILENCING FUNCTION 1B)
AT5G50900

Predicted

Phenotypic Suppression

FSW = 0.0847

Unknown

ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN
AT5G13780

Predicted

synthetic growth defect

FSW = 0.0348

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0379

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0402

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G09200Predicted

Synthetic Rescue

Co-expression

FSW = 0.0458

Unknown

HISTONE H3

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454