Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G33610 - ( ATSWI3B (SWITCH SUBUNIT 3) DNA binding )
31 Proteins interacs with AT2G33610Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G34430 | Experimentaltwo hybrid | FSW = 0.0507
| Class A:nucleusClass D:plastid (p = 0.78)nucleus (p = 0.78) | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT2G46020 | Experimentaltwo hybrid | FSW = 0.0901
| Class A:nucleusClass D:plastid (p = 0.78)nucleus (p = 0.78) | TRANSCRIPTION REGULATORY PROTEIN SNF2 PUTATIVE |
AT3G17590 | Experimentaltwo hybridtwo hybrid | FSW = 0.1934
| Class A:nucleusClass D:plastid (p = 0.78) | BSH (BUSHY GROWTH) CHROMATIN BINDING / PROTEIN BINDING |
AT1G21700 | Experimentalpull downtwo hybridtwo hybrid | FSW = 0.1294
| Class A:nucleusClass D:nucleus (p = 0.78) | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT2G47620 | Experimentaltwo hybrid | FSW = 0.0746
| Class A:nucleusClass D:nucleus (p = 0.78) | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
AT2G28290 | Experimentalpull down | FSW = 0.0861
| Class A:nucleusClass D:nucleus (p = 0.78) | SYD (SPLAYED) ATPASE/ CHROMATIN BINDING |
AT4G16280 | Experimentaltwo hybrid | FSW = 0.1502
| Unknown | FCA RNA BINDING |
AT5G04510 | Experimentalpull down | FSW = 0.0105
| Unknown | PDK1 (3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE 1) 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE/ KINASE/ PHOSPHOINOSITIDE BINDING / PROTEIN BINDING / PROTEIN KINASE |
AT4G26080 | Experimental | FSW = 0.0138
| Unknown | ABI1 (ABA INSENSITIVE 1) CALCIUM ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G57050 | Experimental | FSW = 0.0362
| Unknown | ABI2 (ABA INSENSITIVE 2) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G72770 | Experimental | FSW = 0.0224
| Unknown | HAB1 (HOMOLOGY TO ABI1) CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G11410 | Experimental | FSW = 0.0290
| Unknown | PP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA) PROTEIN BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT4G24190 | PredictedAffinity Capture-Western | FSW = 0.0988
| Class C:nucleus | SHD (SHEPHERD) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT3G01890 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2839
| Class C:nucleus | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT3G44530 | PredictedAffinity Capture-Westerninteraction prediction | FSW = 0.0653
| Class C:nucleus | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G03415 | PredictedPhenotypic EnhancementCo-expression | FSW = 0.0556
| Class C:nucleus | DPB PROTEIN BINDING / PROTEIN HETERODIMERIZATION |
AT5G19310 | Predictedinteraction predictioninterologs mapping | FSW = 0.2335
| Class C:nucleus | HOMEOTIC GENE REGULATOR PUTATIVE |
AT3G06010 | PredictedCo-purificationCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-MStwo hybridCo-expression | FSW = 0.3678
| Class C:nucleus | ATCHR12 ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT4G35800 | Predictedin vitroin vivoCo-expression | FSW = 0.0119
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G01320 | PredictedPhenotypic Enhancement | FSW = 0.0494
| Unknown | ABC TRANSPORTER FAMILY PROTEIN |
AT1G06390 | PredictedPhenotypic Suppression | FSW = 0.0644
| Unknown | GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1) GLYCOGEN SYNTHASE KINASE 3/ KINASE |
AT5G54260 | PredictedAffinity Capture-Western | FSW = 0.0229
| Unknown | MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G70060 | PredictedReconstituted Complex | FSW = 0.0889
| Unknown | SNL4 (SIN3-LIKE 4) |
AT3G51270 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0881
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
AT2G28820 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0635
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN SERINE/THREONINE KINASE |
AT5G38110 | PredictedPhenotypic SuppressionCo-expression | FSW = 0.0329
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G50900 | PredictedPhenotypic Suppression | FSW = 0.0847
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0348
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0379
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0402
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT1G09200 | PredictedSynthetic RescueCo-expression | FSW = 0.0458
| Unknown | HISTONE H3 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454