Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G33730 - ( DEAD box RNA helicase putative )

8 Proteins interacs with AT2G33730
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G67630

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0370

Class C:

nucleus

DNA HELICASE PUTATIVE
AT1G16610

Predicted

Affinity Capture-MS

FSW = 0.0421

Class C:

nucleus

SR45 RNA BINDING / PROTEIN BINDING
AT4G25630

Predicted

Synthetic Lethality

FSW = 0.0080

Class C:

nucleus

FIB2 (FIBRILLARIN 2) SNORNA BINDING
AT5G37720

Predicted

Affinity Capture-MS

FSW = 0.0105

Class C:

nucleus

RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT1G80070

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0394

Unknown

SUS2 (ABNORMAL SUSPENSOR 2)
AT3G49830

Predicted

Affinity Capture-MS

FSW = 0.0577

Unknown

DNA HELICASE-RELATED
AT5G09390

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

CD2-BINDING PROTEIN-RELATED
AT5G41770

Predicted

Affinity Capture-MS

FSW = 0.0366

Unknown

CROOKED NECK PROTEIN PUTATIVE / CELL CYCLE PROTEIN PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454