Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT2G34050 - ( INVOLVED IN protein complex assembly LOCATED IN mitochondrion chloroplast EXPRESSED IN 19 plant structures EXPRESSED DURING 9 growth stages CONTAINS InterPro DOMAIN/s ATP11 (InterProIPR010591) Has 224 Blast hits to 224 proteins in 121 species Archae - 0 Bacteria - 0 Metazoa - 87 Fungi - 80 Plants - 18 Viruses - 0 Other Eukaryotes - 39 (source NCBI BLink) )

9 Proteins interacs with AT2G34050
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G08670

Predicted

two hybrid

two hybrid

in vitro

two hybrid

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.1172

Unknown

ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT2G07698

Predicted

co-fractionation

Co-fractionation

interaction prediction

FSW = 0.2364

Unknown

ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE
ATCG00480Predicted

two hybrid

two hybrid

in vitro

FSW = 0.1629

Unknown

CHLOROPLAST-ENCODED GENE FOR BETA SUBUNIT OF ATP SYNTHASE
AT1G12520

Predicted

synthetic growth defect

FSW = 0.0134

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT5G59710

Predicted

interaction prediction

FSW = 0.1385

Unknown

VIP2 (VIRE2 INTERACTING PROTEIN2) PROTEIN BINDING / TRANSCRIPTION REGULATOR
AT5G40660

Predicted

Affinity Capture-MS

Co-expression

FSW = 0.3618

Unknown

ATP12 PROTEIN-RELATED
AT1G07705

Predicted

Affinity Capture-MS

FSW = 0.1021

Unknown

TRANSCRIPTION REGULATOR
AT3G58560

Predicted

synthetic growth defect

FSW = 0.0629

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G15920

Predicted

synthetic growth defect

FSW = 0.0580

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454