Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G34720 - ( NF-YA4 (NUCLEAR FACTOR Y SUBUNIT A4) specific transcriptional repressor/ transcription factor )
30 Proteins interacs with AT2G34720| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G10800
   | Experimentalprotein complementation assay | FSW = 0.0945
| Unknown | BZIP28 DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G14880
| PredictedAffinity Capture-MS | FSW = 0.0162
| Class C:nucleus | OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) CYSTEINE SYNTHASE |
| AT2G33040
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0331
| Class C:nucleus | ATP SYNTHASE GAMMA CHAIN MITOCHONDRIAL (ATPC) |
| AT2G31660 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0286
| Class C:nucleus | SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2) BINDING / PROTEIN TRANSPORTER |
| AT1G56170
| PredictedReconstituted ComplexAffinity Capture-MSReconstituted ComplexAffinity Capture-MSAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted Complexinterologs mappinginteraction prediction | FSW = 0.1557
| Class C:nucleus | NF-YC2 (NUCLEAR FACTOR Y SUBUNIT C2) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
| AT3G58660
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0393
| Class C:nucleus | 60S RIBOSOMAL PROTEIN-RELATED |
| AT5G37720
| PredictedAffinity Capture-MS | FSW = 0.0361
| Class C:nucleus | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT4G14540
| Predictedinteraction predictioninterologs mapping | FSW = 0.1465
| Class C:nucleus | NF-YB3 (NUCLEAR FACTOR Y SUBUNIT B3) TRANSCRIPTION FACTOR |
| AT3G13920
| PredictedAffinity Capture-MS | FSW = 0.0323
| Class C:nucleus | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT5G47640
| PredictedReconstituted ComplexAffinity Capture-MSAffinity Capture-MStwo hybridReconstituted Complex | FSW = 0.0945
| Class C:nucleus | NF-YB2 (NUCLEAR FACTOR Y SUBUNIT B2) TRANSCRIPTION FACTOR |
| AT1G30500
| PredictedPhylogenetic profile method | FSW = 0.0539
| Class C:nucleus | NF-YA7 (NUCLEAR FACTOR Y SUBUNIT A7) SPECIFIC TRANSCRIPTIONAL REPRESSOR/ TRANSCRIPTION FACTOR |
| AT3G55620
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0351
| Class C:nucleus | EMB1624 (EMBRYO DEFECTIVE 1624) RIBOSOME BINDING / TRANSLATION INITIATION FACTOR |
| AT5G15550
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0234
| Class C:nucleus | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT4G18040
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0339
| Class C:nucleus | EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E) RNA BINDING / RNA CAP BINDING / PROTEIN BINDING / TRANSLATION INITIATION FACTOR |
| AT1G54270
| Predictedinteraction prediction | FSW = 0.0289
| Unknown | EIF4A-2 ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT4G13940
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0220
| Unknown | MEE58 (MATERNAL EFFECT EMBRYO ARREST 58) ADENOSYLHOMOCYSTEINASE/ COPPER ION BINDING |
| AT1G30470 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | SIT4 PHOSPHATASE-ASSOCIATED FAMILY PROTEIN |
| AT5G09650
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0128
| Unknown | ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE |
| AT3G59760
| Predictedinteraction prediction | FSW = 0.0180
| Unknown | OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C) ATP BINDING / CYSTEINE SYNTHASE |
| AT5G52640
| Predictedsynthetic growth defect | FSW = 0.0072
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT4G26110
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0250
| Unknown | NAP11 (NUCLEOSOME ASSEMBLY PROTEIN11) DNA BINDING |
| AT1G70310
| Predictedinteraction prediction | FSW = 0.0662
| Unknown | SPDS2 (SPERMIDINE SYNTHASE 2) SPERMIDINE SYNTHASE |
| AT5G59950
| Predictedinteraction prediction | FSW = 0.0332
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
| AT5G02050
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0279
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
| AT1G23820
| PredictedAffinity Capture-MS | FSW = 0.1076
| Unknown | SPDS1 (SPERMIDINE SYNTHASE 1) SPERMIDINE SYNTHASE |
| AT1G29990
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0173
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
| AT2G44150
| PredictedSynthetic Lethality | FSW = 0.0092
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
| AT3G07270
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0269
| Unknown | GTP CYCLOHYDROLASE I |
| AT5G06360
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0591
| Unknown | RIBOSOMAL PROTEIN S8E FAMILY PROTEIN |
| AT5G19820
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0131
| Unknown | EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.437 seconds to be build.
This page takes 0.437 seconds to be build.