Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G34890 - ( CTP synthase putative / UTP--ammonia ligase putative )

35 Proteins interacs with AT2G34890
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G01100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4444

Unknown

ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1) ADP TRANSMEMBRANE TRANSPORTER/ AMP TRANSMEMBRANE TRANSPORTER/ ATP TRANSMEMBRANE TRANSPORTER/ BINDING
AT5G63400

Predicted

biochemical

FSW = 0.0130

Unknown

ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT1G07660Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3192

Unknown

HISTONE H4
AT1G16240

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3161

Unknown

SYP51 (SYNTAXIN OF PLANTS 51) SNAP RECEPTOR
AT5G10350

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Co-crystal Structure

Affinity Capture-MS

Co-purification

Affinity Capture-Western

Co-crystal Structure

Co-purification

two hybrid

Synthetic Lethality

synthetic growth defect

FSW = 0.1678

Unknown

POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN
AT2G40400

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3529

Unknown

UNKNOWN PROTEIN
AT5G14320

Predicted

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

two hybrid

FSW = 0.0986

Unknown

30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
AT2G45300

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1588

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT1G12900

Predicted

Affinity Capture-MS

FSW = 0.1907

Unknown

GAPA-2 (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT 2) NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE
AT4G36640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.4793

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G25740

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4580

Unknown

40S RIBOSOMAL PROTEIN S10 (RPS10A)
AT3G60180

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

synthetic growth defect

FSW = 0.4000

Unknown

URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE
AT2G44860

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

FSW = 0.0923

Unknown

60S RIBOSOMAL PROTEIN L24 PUTATIVE
AT2G28740Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.7385

Unknown

HIS4 DNA BINDING
AT2G47620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2087

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT3G18480

Predicted

Affinity Capture-Western

Co-purification

FSW = 0.0857

Unknown

ATCASP (ARABIDOPSIS THALIANA CCAAT-DISPLACEMENT PROTEIN ALTERNATIVELY SPLICED PRODUCT)
AT4G16420

Predicted

Affinity Capture-MS

FSW = 0.0873

Unknown

ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT1G02100

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2409

Unknown

LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
AT1G13580

Predicted

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

FSW = 0.1235

Unknown

LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)
AT1G72680

Predicted

Affinity Capture-MS

Affinity Capture-MS

two hybrid

two hybrid

Affinity Capture-MS

FSW = 0.3043

Unknown

CINNAMYL-ALCOHOL DEHYDROGENASE PUTATIVE
AT1G78960

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3200

Unknown

ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE
AT2G33560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2244

Unknown

SPINDLE CHECKPOINT PROTEIN-RELATED
AT2G34750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.2371

Unknown

RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN
AT3G09640

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Co-purification

FSW = 0.2637

Unknown

APX2 (ASCORBATE PEROXIDASE 2) L-ASCORBATE PEROXIDASE
AT3G28610

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.4311

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT3G46320Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1801

Unknown

HISTONE H4
AT5G20560

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2143

Unknown

BETA-13-GLUCANASE PUTATIVE
AT5G38890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1745

Unknown

EXORIBONUCLEASE-RELATED
AT3G22320

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2036

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G59540Predicted

Affinity Capture-MS

FSW = 0.0232

Unknown

60S RIBOSOMAL PROTEIN L38 (RPL38B)
AT5G14180

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1537

Unknown

MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC
AT4G20320

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.1355

Unknown

CTP SYNTHASE/ CATALYTIC
AT1G30820

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0678

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT4G02120

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0976

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT3G12670

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0786

Unknown

EMB2742 (EMBRYO DEFECTIVE 2742) CTP SYNTHASE/ CATALYTIC

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454