Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G35120 - ( glycine cleavage system H protein mitochondrial putative )

9 Proteins interacs with AT2G35120
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G35370

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1426

Class C:

mitochondrion

GDCH GLYCINE DEHYDROGENASE (DECARBOXYLATING)
AT3G23940

Predicted

Affinity Capture-MS

FSW = 0.0802

Unknown

DEHYDRATASE FAMILY
AT4G31050

Predicted

Affinity Capture-MS

FSW = 0.0585

Unknown

LIPOYLTRANSFERASE (LIP2P)
AT5G06290

Predicted

biochemical

FSW = 0.0142

Unknown

2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT4G34430

Predicted

Affinity Capture-Western

FSW = 0.0588

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT4G13980

Predicted

biochemical

FSW = 0.0115

Unknown

AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR
AT1G54560Predicted

biochemical

FSW = 0.0285

Unknown

XIE MOTOR/ PROTEIN BINDING
AT5G13700

Predicted

Affinity Capture-Western

two hybrid

FSW = 0.1829

Unknown

ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1) FAD BINDING / POLYAMINE OXIDASE
AT5G26250

Predicted

Affinity Capture-Western

FSW = 0.0844

Unknown

SUGAR TRANSPORTER PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454