Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G35670 - ( FIS2 (FERTILIZATION INDEPENDENT SEED 2) transcription factor )
38 Proteins interacs with AT2G35670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G02580 | Experimentaltwo hybridcoimmunoprecipitation | FSW = 0.0779
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | MEA (MEDEA) SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT2G23380 | Experimental | FSW = 0.0620
| Class D:nucleus (p = 0.78) | CLF (CURLY LEAF) TRANSCRIPTION FACTOR |
AT4G02020 | Experimentaltwo hybridcoimmunoprecipitation | FSW = 0.0276
| Class D:nucleus (p = 0.78) | SWN (SWINGER) TRANSCRIPTION FACTOR |
AT3G48750 | PredictedPhenotypic Suppression | FSW = 0.0066
| Class C:nucleus | CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT5G67270 | PredictedSynthetic Lethality | FSW = 0.2054
| Class C:nucleus | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G12810 | PredictedPhenotypic Suppression | FSW = 0.1660
| Class C:nucleus | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT1G21700 | PredictedPhenotypic Enhancement | FSW = 0.0230
| Class C:nucleus | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING |
AT2G18760 | PredictedPhenotypic Suppression | FSW = 0.0207
| Class C:nucleus | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G08630 | PredictedPhenotypic Enhancement | FSW = 0.0118
| Class C:nucleus | DDT DOMAIN-CONTAINING PROTEIN |
AT1G64790 | PredictedPhenotypic Enhancement | FSW = 0.0444
| Unknown | BINDING |
AT3G22110 | PredictedPhenotypic Enhancement | FSW = 0.0743
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0520
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT1G12520 | PredictedPhenotypic Enhancement | FSW = 0.1444
| Unknown | ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE |
AT2G28190 | PredictedPhenotypic Enhancement | FSW = 0.1667
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G25800 | PredictedAffinity Capture-MS | FSW = 0.0373
| Unknown | PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR |
AT2G42500 | PredictedAffinity Capture-MS | FSW = 0.0421
| Unknown | PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT3G25980 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0828
| Unknown | MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2) |
AT1G08780 | PredictedPhenotypic Suppression | FSW = 0.1772
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G51310 | PredictedPhenotypic Suppression | FSW = 0.0780
| Unknown | TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE |
AT1G52740 | PredictedPhenotypic Suppression | FSW = 0.1156
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G59890 | PredictedPhenotypic Enhancement | FSW = 0.1368
| Unknown | SNL5 (SIN3-LIKE 5) |
AT2G34500 | PredictedPhenotypic Enhancement | FSW = 0.0496
| Unknown | CYP710A1 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 1) C-22 STEROL DESATURASE/ OXYGEN BINDING |
AT1G04730 | Predictedsynthetic growth defect | FSW = 0.1634
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0947
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G02760 | PredictedSynthetic Lethality | FSW = 0.1465
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1937
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G02820 | PredictedSynthetic Lethality | FSW = 0.1587
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT3G42660 | PredictedSynthetic Lethality | FSW = 0.1971
| Unknown | NUCLEOTIDE BINDING |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.1172
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G26110 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | ATP BINDING / CATALYTIC/ PROTEIN KINASE |
AT3G22480 | PredictedPhenotypic Suppression | FSW = 0.1386
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G26020 | PredictedAffinity Capture-MS | FSW = 0.2348
| Unknown | SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE |
AT4G10570 | PredictedPhenotypic Enhancement | FSW = 0.0244
| Unknown | UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9) CYSTEINE-TYPE ENDOPEPTIDASE/ UBIQUITIN THIOLESTERASE |
AT4G33100 | PredictedPhenotypic Suppression | FSW = 0.0373
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT4G38630 | PredictedPhenotypic Enhancement | FSW = 0.0850
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10790 | PredictedPhenotypic Enhancement | FSW = 0.1537
| Unknown | UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING |
AT5G27970 | PredictedPhenotypic Enhancement | FSW = 0.1333
| Unknown | BINDING |
AT5G49510 | PredictedPhenotypic Suppression | FSW = 0.1617
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454