Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G35670 - ( FIS2 (FERTILIZATION INDEPENDENT SEED 2) transcription factor )

38 Proteins interacs with AT2G35670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G02580

Experimental

two hybrid

coimmunoprecipitation

FSW = 0.0779

Class A:

nucleus

Class B:

cytosol

Class D:

nucleus (p = 0.78)

MEA (MEDEA) SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR
AT2G23380

Experimental

FSW = 0.0620

Class D:

nucleus (p = 0.78)

CLF (CURLY LEAF) TRANSCRIPTION FACTOR
AT4G02020

Experimental

two hybrid

coimmunoprecipitation

FSW = 0.0276

Class D:

nucleus (p = 0.78)

SWN (SWINGER) TRANSCRIPTION FACTOR
AT3G48750

Predicted

Phenotypic Suppression

FSW = 0.0066

Class C:

nucleus

CDC2 (CELL DIVISION CONTROL 2) CYCLIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE
AT5G67270

Predicted

Synthetic Lethality

FSW = 0.2054

Class C:

nucleus

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G12810

Predicted

Phenotypic Suppression

FSW = 0.1660

Class C:

nucleus

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G21700

Predicted

Phenotypic Enhancement

FSW = 0.0230

Class C:

nucleus

ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C) DNA BINDING
AT2G18760

Predicted

Phenotypic Suppression

FSW = 0.0207

Class C:

nucleus

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G08630

Predicted

Phenotypic Enhancement

FSW = 0.0118

Class C:

nucleus

DDT DOMAIN-CONTAINING PROTEIN
AT1G64790Predicted

Phenotypic Enhancement

FSW = 0.0444

Unknown

BINDING
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0743

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G13710

Predicted

Phenotypic Enhancement

FSW = 0.0520

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT1G12520

Predicted

Phenotypic Enhancement

FSW = 0.1444

Unknown

ATCCS (COPPER CHAPERONE FOR SOD1) SUPEROXIDE DISMUTASE/ SUPEROXIDE DISMUTASE COPPER CHAPERONE
AT2G28190

Predicted

Phenotypic Enhancement

FSW = 0.1667

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G25800

Predicted

Affinity Capture-MS

FSW = 0.0373

Unknown

PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT2G42500

Predicted

Affinity Capture-MS

FSW = 0.0421

Unknown

PP2A-4 HYDROLASE/ PROTEIN SERINE/THREONINE PHOSPHATASE
AT3G25980

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.0828

Unknown

MITOTIC SPINDLE CHECKPOINT PROTEIN PUTATIVE (MAD2)
AT1G08780

Predicted

Phenotypic Suppression

FSW = 0.1772

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G51310

Predicted

Phenotypic Suppression

FSW = 0.0780

Unknown

TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE
AT1G52740

Predicted

Phenotypic Suppression

FSW = 0.1156

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59890

Predicted

Phenotypic Enhancement

FSW = 0.1368

Unknown

SNL5 (SIN3-LIKE 5)
AT2G34500

Predicted

Phenotypic Enhancement

FSW = 0.0496

Unknown

CYP710A1 (CYTOCHROME P450 FAMILY 710 SUBFAMILY A POLYPEPTIDE 1) C-22 STEROL DESATURASE/ OXYGEN BINDING
AT1G04730Predicted

synthetic growth defect

FSW = 0.1634

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0947

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

Synthetic Lethality

FSW = 0.1465

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G44580

Predicted

synthetic growth defect

FSW = 0.1937

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT3G02820

Predicted

Synthetic Lethality

FSW = 0.1587

Unknown

ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN
AT3G42660

Predicted

Synthetic Lethality

FSW = 0.1971

Unknown

NUCLEOTIDE BINDING
AT5G13780

Predicted

synthetic growth defect

FSW = 0.1172

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G26110

Predicted

Affinity Capture-MS

FSW = 0.0209

Unknown

ATP BINDING / CATALYTIC/ PROTEIN KINASE
AT3G22480

Predicted

Phenotypic Suppression

FSW = 0.1386

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G26020

Predicted

Affinity Capture-MS

FSW = 0.2348

Unknown

SERINE/THREONINE PROTEIN PHOSPHATASE 2A (PP2A) REGULATORY SUBUNIT B PUTATIVE
AT4G10570

Predicted

Phenotypic Enhancement

FSW = 0.0244

Unknown

UBP9 (UBIQUITIN-SPECIFIC PROTEASE 9) CYSTEINE-TYPE ENDOPEPTIDASE/ UBIQUITIN THIOLESTERASE
AT4G33100

Predicted

Phenotypic Suppression

FSW = 0.0373

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G38630

Predicted

Phenotypic Enhancement

FSW = 0.0850

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G10790

Predicted

Phenotypic Enhancement

FSW = 0.1537

Unknown

UBP22 (UBIQUITIN-SPECIFIC PROTEASE 22) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE/ ZINC ION BINDING
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.1333

Unknown

BINDING
AT5G49510

Predicted

Phenotypic Suppression

FSW = 0.1617

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454