Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT2G35795 - ( DNAJ heat shock N-terminal domain-containing protein )
11 Proteins interacs with AT2G35795| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G62870
   | Predictedsynthetic growth defect | FSW = 0.0079
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
| AT3G59280
| PredictedReconstituted Complexinterologs mappingCo-purificationAffinity Capture-WesternAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purificationSynthetic Lethality | FSW = 0.1951
| Unknown | TXR1 (THAXTOMIN A RESISTANT 1) |
| AT5G47510
| Predictedsynthetic growth defect | FSW = 0.0317
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT3G10540
| PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2307
| Unknown | 3-PHOSPHOINOSITIDE-DEPENDENT PROTEIN KINASE PUTATIVE |
| AT2G20510
| PredictedAffinity Capture-WesternReconstituted Complex | FSW = 0.1076
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
| AT1G17530
| PredictedAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-Western | FSW = 0.1910
| Unknown | ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23) P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER |
| AT1G20350
| PredictedReconstituted Complexinterologs mappingAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Western | FSW = 0.3618
| Unknown | ATTIM17-1 P-P-BOND-HYDROLYSIS-DRIVEN PROTEIN TRANSMEMBRANE TRANSPORTER/ PROTEIN TRANSPORTER |
| AT3G50845
| PredictedAffinity Capture-MS | FSW = 0.1113
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF59 (INTERPROIPR002744) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS VACUOLAR SORTING SIGNAL BINDING (TAIRAT1G683102) HAS 415 BLAST HITS TO 414 PROTEINS IN 153 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 216 FUNGI - 86 PLANTS - 41 VIRUSES - 0 OTHER EUKARYOTES - 72 (SOURCE NCBI BLINK) |
| AT5G16270
| PredictedAffinity Capture-Western | FSW = 0.0369
| Unknown | SYN4 (SISTER CHROMATID COHESION 1 PROTEIN 4) |
| AT3G09700
| PredictedGene fusion methodCo-expression | FSW = 0.1062
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT5G03030
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.0697
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.199 seconds to be build.
This page takes 0.199 seconds to be build.