Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G35940 - ( BLH1 (BEL1-LIKE HOMEODOMAIN 1) DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor )
38 Proteins interacs with AT2G35940Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G11910 | Experimentaltwo hybrid | FSW = 0.1757
| Unknown | ASPARTYL PROTEASE FAMILY PROTEIN |
AT1G62360 | Experimentaltwo hybrid | FSW = 0.2476
| Unknown | STM (SHOOT MERISTEMLESS) TRANSCRIPTION FACTOR |
AT1G75410 | Experimentaltwo hybrid | FSW = 0.6163
| Unknown | BLH3 (BEL1-LIKE HOMEODOMAIN 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G32040 | Experimentaltwo hybrid | FSW = 0.5172
| Unknown | KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT5G25220 | Experimentaltwo hybrid | FSW = 0.4063
| Unknown | KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G30590 | Experimentaltwo hybrid | FSW = 0.1684
| Unknown | RNA POLYMERASE I SPECIFIC TRANSCRIPTION INITIATION FACTOR RRN3 FAMILY PROTEIN |
AT4G32980 | Experimentaltwo hybrid | FSW = 0.2723
| Unknown | ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1) DNA BINDING / SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT1G23380 | Experimentaltwo hybrid | FSW = 0.4034
| Unknown | KNAT6 DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT1G26260 | Experimentaltwo hybrid | FSW = 0.3711
| Unknown | CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G70510 | Experimental | FSW = 0.2476
| Unknown | KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) TRANSCRIPTION FACTOR |
AT4G18830 | Experimentalconfocal microscopytwo hybrid | FSW = 0.3404
| Unknown | OFP5 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 5) |
AT5G01840 | Experimentalconfocal microscopytwo hybrid | FSW = 0.3723
| Unknown | OFP1 (OVATE FAMILY PROTEIN 1) PROTEIN BINDING / TRANSCRIPTION REPRESSOR |
AT5G41410 | Experimentaltwo hybrid | FSW = 0.5319
| Unknown | BEL1 (BELL 1) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT4G36870 | Experimentaltwo hybrid | FSW = 0.3939
| Unknown | BLH2 (BEL1-LIKE HOMEODOMAIN 2) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G23760 | Experimentaltwo hybrid | FSW = 0.5546
| Unknown | BLH4 (BEL1-LIKE HOMEODOMAIN 4) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G34610 | Experimentaltwo hybrid | FSW = 0.3549
| Unknown | BLH6 (BELL1-LIKE HOMEODOMAIN 6) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G19700 | Experimentaltwo hybrid | FSW = 0.5101
| Unknown | BEL10 (BEL1-LIKE HOMEODOMAIN 10) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G30400 | Experimentaltwo hybrid | FSW = 0.3401
| Unknown | OFP2 (OVATE FAMILY PROTEIN 2) |
AT5G58360 | Experimentaltwo hybrid | FSW = 0.2066
| Unknown | ATOFP3 |
AT1G06920 | Experimentaltwo hybrid | FSW = 0.3401
| Unknown | OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4) |
AT2G36050 | Experimentaltwo hybrid | FSW = 0.1429
| Unknown | OFP15 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 15) |
AT5G04830 | Experimentaltwo hybrid | FSW = 0.2667
| Unknown | UNKNOWN PROTEIN |
AT2G40000 | Experimentaltwo hybrid | FSW = 0.2066
| Unknown | HSPRO2 (ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2) |
AT4G16780 | PredictedPhenotypic Suppression | FSW = 0.0239
| Unknown | ATHB-2 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2) DNA BINDING / PROTEIN HOMODIMERIZATION/ SEQUENCE-SPECIFIC DNA BINDING / TRANSCRIPTION FACTOR |
AT1G18080 | Predictedtwo hybrid | FSW = 0.0134
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT3G48930 | Predictedtwo hybrid | FSW = 0.0078
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G10380 | Predictedtwo hybrid | FSW = 0.0229
| Unknown | SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) |
AT2G18040 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT2G01430 | Predictedin vitro | FSW = 0.0355
| Unknown | ATHB17 (ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17) TRANSCRIPTION FACTOR |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0061
| Unknown | CHC1 |
AT2G36010 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | E2F3 (E2F TRANSCRIPTION FACTOR 3) DNA BINDING / TRANSCRIPTION FACTOR |
AT4G38130 | Predictedin vitro | FSW = 0.0092
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
AT1G26960 | Predictedin vivo | FSW = 0.0976
| Unknown | ATHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23) DNA BINDING / TRANSCRIPTION FACTOR |
AT1G05730 | Predictedtwo hybrid | FSW = 0.0390
| Unknown | UNKNOWN PROTEIN |
AT1G13290 | Predictedtwo hybrid | FSW = 0.0300
| Unknown | DOT5 (DEFECTIVELY ORGANIZED TRIBUTARIES 5) TRANSCRIPTION FACTOR |
AT5G41190 | Predictedtwo hybrid | FSW = 0.0060
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK) |
AT1G07950 | Predictedtwo hybrid | FSW = 0.0390
| Unknown | SURFEIT LOCUS PROTEIN 5 FAMILY PROTEIN / SURF5 FAMILY PROTEIN |
AT2G40780 | Predictedtwo hybrid | FSW = 0.0229
| Unknown | RNA BINDING / TRANSLATION INITIATION FACTOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454