Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G36060 - ( ubiquitin-conjugating enzyme family protein )
37 Proteins interacs with AT2G36060Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G16890 | Experimentaltwo hybrid | FSW = 0.1237
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT1G78870 | Experimentalpull downtwo hybrid | FSW = 0.0764
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G67500 | Predictedbiochemical | FSW = 0.0282
| Unknown | VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL |
AT5G05520 | PredictedPhenotypic Suppressioninterologs mapping | FSW = 0.0515
| Unknown | OUTER MEMBRANE OMP85 FAMILY PROTEIN |
AT1G56070 | Predictedtwo hybrid | FSW = 0.0125
| Unknown | LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING |
AT3G26590 | Predictedbiochemical | FSW = 0.0266
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT3G62870 | PredictedAffinity Capture-MS | FSW = 0.0278
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G06290 | Predictedbiochemical | FSW = 0.0240
| Unknown | 2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN |
AT1G51040 | PredictedAffinity Capture-MS | FSW = 0.0306
| Unknown | PHOSPHATIDYLINOSITOL 4-KINASE PUTATIVE |
AT1G10070 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC |
AT4G30950 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0525
| Unknown | FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE |
AT3G48930 | Predictedbiochemical | FSW = 0.0293
| Unknown | EMB1080 (EMBRYO DEFECTIVE 1080) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G17310 | Predictedtwo hybrid | FSW = 0.0664
| Unknown | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE PUTATIVE / UDP-GLUCOSE PYROPHOSPHORYLASE PUTATIVE / UGPASE PUTATIVE |
AT4G34430 | PredictedAffinity Capture-MS | FSW = 0.0283
| Unknown | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT4G13980 | Predictedbiochemical | FSW = 0.0273
| Unknown | AT-HSFA5 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G39795 | PredictedAffinity Capture-MS | FSW = 0.0382
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT4G23900 | Predictedtwo hybrid | FSW = 0.0148
| Unknown | NUCLEOSIDE DIPHOSPHATE KINASE 4 (NDK4) |
AT2G18450 | PredictedAffinity Capture-MS | FSW = 0.0226
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G54840 | PredictedPhenotypic Suppression | FSW = 0.0134
| Unknown | ARA6 GTP BINDING / GTPASE |
AT2G38960 | Predictedbiochemical | FSW = 0.0264
| Unknown | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
AT2G35390 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 1 (PRSI) |
AT1G54560 | Predictedbiochemical | FSW = 0.0193
| Unknown | XIE MOTOR/ PROTEIN BINDING |
AT1G66590 | Predictedtwo hybrid | FSW = 0.0133
| Unknown | COX19 FAMILY PROTEIN |
AT1G70290 | Predictedbiochemical | FSW = 0.0221
| Unknown | ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE |
AT3G06470 | Predictedbiochemical | FSW = 0.0415
| Unknown | GNS1/SUR4 MEMBRANE FAMILY PROTEIN |
AT3G57140 | Predictedbiochemical | FSW = 0.1352
| Unknown | PATATIN-RELATED |
AT4G14240 | Predictedbiochemical | FSW = 0.0274
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF21 (INTERPROIPR002550) CYSTATHIONINE BETA-SYNTHASE CORE (INTERPROIPR000644) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS CBS DOMAIN-CONTAINING PROTEIN-RELATED (TAIRAT4G142301) HAS 6770 BLAST HITS TO 6657 PROTEINS IN 1347 SPECIES ARCHAE - 62 BACTERIA - 4461 METAZOA - 254 FUNGI - 179 PLANTS - 121 VIRUSES - 0 OTHER EUKARYOTES - 1693 (SOURCE NCBI BLINK) |
AT4G25950 | Predictedbiochemical | FSW = 0.0323
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT4G38250 | Predictedbiochemical | FSW = 0.0234
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT5G44740 | Predictedbiochemical | FSW = 0.0545
| Unknown | POLH (Y-FAMILT DNA POLYMERASE H) DNA-DIRECTED DNA POLYMERASE |
AT5G66640 | Predictedbiochemical | FSW = 0.0092
| Unknown | DAR3 (DA1-RELATED PROTEIN 3) |
AT4G38330 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN MALE GAMETOPHYTE POLLEN TUBE EXPRESSED DURING L MATURE POLLEN STAGE M GERMINATED POLLEN STAGE CONTAINS INTERPRO DOMAIN/S HLY-III RELATED (INTERPROIPR004254) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G382901) HAS 8 BLAST HITS TO 8 PROTEINS IN 1 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 0 FUNGI - 0 PLANTS - 8 VIRUSES - 0 OTHER EUKARYOTES - 0 (SOURCE NCBI BLINK) |
AT5G06600 | PredictedAffinity Capture-MS | FSW = 0.0212
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT3G52560 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.1812
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G23260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0968
| Unknown | MMZ1 (MMS ZWEI HOMOLOGUE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G41700 | PredictedGene fusion methodCo-expression | FSW = 0.0230
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT1G70660 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1620
| Unknown | MMZ2 (MMS ZWEI HOMOLOGE 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454