Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G36260 - ( iron-sulfur cluster assembly complex protein putative )
23 Proteins interacs with AT2G36260Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G47610 | PredictedPhenotypic Enhancement | FSW = 0.0238
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AA) |
AT3G47520 | PredictedPhenotypic Enhancement | FSW = 0.0263
| Unknown | MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0213
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G65430 | PredictedPhenotypic Suppression | FSW = 0.0361
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G15390 | Predictedtwo hybrid | FSW = 0.1667
| Unknown | PDF1A (PEPTIDE DEFORMYLASE 1A) PEPTIDE DEFORMYLASE |
AT2G42590 | PredictedSynthetic Lethality | FSW = 0.0282
| Unknown | GRF9 (GENERAL REGULATORY FACTOR 9) CALCIUM ION BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT5G62300 | Predictedtwo hybrid | FSW = 0.0111
| Unknown | 40S RIBOSOMAL PROTEIN S20 (RPS20C) |
AT5G25754 | Predictedtwo hybrid | FSW = 0.0404
| Unknown | UNKNOWN PROTEIN |
AT5G23320 | PredictedPhenotypic Enhancement | FSW = 0.0726
| Unknown | ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A) CARBOXYL-O-METHYLTRANSFERASE/ PROTEIN-S-ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
AT4G39100 | PredictedPhenotypic Enhancement | FSW = 0.1143
| Unknown | SHL1 (SHORT LIFE) TRANSCRIPTION FACTOR/ ZINC-MEDIATED TRANSCRIPTIONAL ACTIVATOR |
AT3G27180 | Predictedtwo hybrid | FSW = 0.0315
| Unknown | UNKNOWN PROTEIN |
AT5G01160 | Predictedtwo hybrid | FSW = 0.0246
| Unknown | E-CADHERIN BINDING PROTEIN-RELATED |
AT5G06170 | Predictedtwo hybrid | FSW = 0.0324
| Unknown | ATSUC9 (SUCROSE-PROTON SYMPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUCROSE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGAR TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G66070 | PredictedPhenotypic Enhancement | FSW = 0.1524
| Unknown | TRANSLATION INITIATION FACTOR-RELATED |
AT1G76920 | PredictedPhenotypic Suppression | FSW = 0.0703
| Unknown | F-BOX FAMILY PROTEIN (FBX3) |
AT1G08910 | PredictedPhenotypic Enhancement | FSW = 0.1149
| Unknown | EMB3001 (EMBRYO DEFECTIVE 3001) ZINC ION BINDING |
AT3G11830 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic EnhancementSynthetic Lethalityinterologs mapping | FSW = 0.1112
| Unknown | CHAPERONIN PUTATIVE |
AT5G14050 | PredictedPhenotypic Enhancement | FSW = 0.0375
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT5G38110 | PredictedPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.1379
| Unknown | ASF1B (ANTI- SILENCING FUNCTION 1B) |
AT5G40040 | PredictedPhenotypic Enhancement | FSW = 0.0803
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E) |
AT5G64240 | PredictedPhenotypic EnhancementPhenotypic Enhancement | FSW = 0.1296
| Unknown | ATMC3 (METACASPASE 3) CYSTEINE-TYPE ENDOPEPTIDASE |
AT5G06600 | PredictedSynthetic Lethality | FSW = 0.0188
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT2G16710 | PredictedPhylogenetic profile method | FSW = 0.0847
| Unknown | HESB-LIKE DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454