Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G36300 - ( integral membrane Yip1 family protein )
49 Proteins interacs with AT2G36300Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G41790 | PredictedSynthetic Lethality | FSW = 0.0451
| Unknown | CIP1 (COP1-INTERACTIVE PROTEIN 1) PROTEIN BINDING |
AT4G19640 | PredictedSynthetic LethalitySynthetic Lethalitytwo hybrid | FSW = 0.0978
| Unknown | ARA7 GTP BINDING |
AT1G02130 | Predictedinteraction predictiontwo hybridtwo hybridSynthetic LethalitySynthetic LethalityReconstituted ComplexAffinity Capture-Western | FSW = 0.2213
| Unknown | ARA-5 (ARABIDOPSIS RAS 5) GTP BINDING |
AT2G01470 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0741
| Unknown | STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING |
AT1G16920 | Predictedinteraction predictiontwo hybridSynthetic LethalityAffinity Capture-WesternSynthetic Lethalitytwo hybridinterologs mapping | FSW = 0.0866
| Unknown | ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B) GTP BINDING |
AT5G45130 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethality | FSW = 0.0929
| Unknown | RHA1 (RAB HOMOLOG 1) GTP BINDING |
AT1G22740 | Predictedtwo hybrid | FSW = 0.1822
| Unknown | RABG3B GTP BINDING |
AT1G55190 | Predictedinterologs mappinginteraction prediction | FSW = 0.1802
| Unknown | PRA7 |
AT1G79590 | Predictedtwo hybrid | FSW = 0.0849
| Unknown | SYP52 (SYNTAXIN OF PLANTS 52) SNAP RECEPTOR |
AT1G64330 | PredictedSynthetic Lethality | FSW = 0.0494
| Unknown | MYOSIN HEAVY CHAIN-RELATED |
AT1G18080 | Predictedtwo hybridtwo hybrid | FSW = 0.0049
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT3G16100 | Predictedtwo hybrid | FSW = 0.1688
| Unknown | ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C) GTP BINDING |
AT3G09900 | Predictedtwo hybridSynthetic Lethality | FSW = 0.1556
| Unknown | ATRABE1E (ARABIDOPSIS RAB GTPASE HOMOLOG E1E) GTP BINDING |
AT4G18430 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1429
| Unknown | ATRABA1E (ARABIDOPSIS RAB GTPASE HOMOLOG A1E) GTP BINDING |
AT1G06400 | Predictedtwo hybridSynthetic LethalityAffinity Capture-WesternSynthetic Lethalitytwo hybrid | FSW = 0.1150
| Unknown | ARA-2 GTP BINDING |
AT2G30050 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0505
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G22290 | PredictedSynthetic LethalitySynthetic Lethalitytwo hybrid | FSW = 0.1539
| Unknown | ATRABH1D (ARABIDOPSIS RAB GTPASE HOMOLOG H1D) GTP BINDING |
AT1G28490 | Predictedtwo hybridtwo hybridinteraction prediction | FSW = 0.1144
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
AT1G04260 | Predictedtwo hybridtwo hybrid | FSW = 0.1771
| Unknown | MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) PROTEIN BINDING |
AT3G59500 | Predictedinteraction predictiontwo hybridinterologs mappingAffinity Capture-WesternAffinity Capture-Westerntwo hybridtwo hybridtwo hybridReconstituted Complexinterologs mappinginterologs mapping | FSW = 0.2559
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
AT1G67730 | Predictedtwo hybrid | FSW = 0.0208
| Unknown | YBR159 KETOREDUCTASE/ OXIDOREDUCTASE |
AT1G69700 | Predictedtwo hybridAffinity Capture-WesternPhenotypic Suppression | FSW = 0.1118
| Unknown | ATHVA22C |
AT5G50720 | Predictedtwo hybridAffinity Capture-WesternPhenotypic Suppression | FSW = 0.0957
| Unknown | ATHVA22E |
AT1G49900 | Predictedtwo hybrid | FSW = 0.0440
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G14255 | Predictedtwo hybrid | FSW = 0.0769
| Unknown | ZINC ION BINDING |
AT4G01270 | Predictedtwo hybrid | FSW = 0.0162
| Unknown | ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN |
AT1G18830 | PredictedSynthetic Lethality | FSW = 0.0306
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT2G37550 | Predictedtwo hybrid | FSW = 0.0546
| Unknown | AGD7 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT4G15770 | PredictedSynthetic Lethality | FSW = 0.0038
| Unknown | RNA BINDING / PROTEIN BINDING |
AT4G35560 | Predictedtwo hybrid | FSW = 0.0180
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN LOCATED IN CUL4 RING UBIQUITIN LIGASE COMPLEX EXPRESSED IN 20 PLANT STRUCTURES EXPRESSED DURING 7 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S WD40 REPEAT-LIKE (INTERPROIPR011046) WD40 REPEAT (INTERPROIPR001680) WD40/YVTN REPEAT-LIKE (INTERPROIPR015943) LETHAL GIANT LARVAE (LGL) LIKE C-TERMINAL (INTERPROIPR013905) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN (TAIRAT5G055701) HAS 562 BLAST HITS TO 546 PROTEINS IN 129 SPECIES ARCHAE - 0 BACTERIA - 20 METAZOA - 305 FUNGI - 89 PLANTS - 43 VIRUSES - 0 OTHER EUKARYOTES - 105 (SOURCE NCBI BLINK) |
AT5G10260 | PredictedSynthetic Lethalitytwo hybridSynthetic Lethality | FSW = 0.0930
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT3G01340 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0519
| Unknown | PROTEIN TRANSPORT PROTEIN SEC13 FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT4G14160 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0764
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT4G16480 | Predictedtwo hybrid | FSW = 0.0690
| Unknown | INT4 (INOSITOL TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MYO-INOSITOLHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G34450 | Predictedsynthetic growth defect | FSW = 0.0364
| Unknown | COATOMER GAMMA-2 SUBUNIT PUTATIVE / GAMMA-2 COAT PROTEIN PUTATIVE / GAMMA-2 COP PUTATIVE |
AT5G09550 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1408
| Unknown | RAB GDP-DISSOCIATION INHIBITOR |
AT5G27490 | Predictedtwo hybrid | FSW = 0.0429
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT5G50550 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0690
| Unknown | WD-40 REPEAT FAMILY PROTEIN / ST12P PROTEIN PUTATIVE |
AT1G30890 | Predictedtwo hybridtwo hybridinterologs mappingAffinity Capture-WesternAffinity Capture-Westerninterologs mappingReconstituted Complextwo hybrid | FSW = 0.3450
| Unknown | INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN |
AT2G18840 | PredictedReconstituted Complextwo hybrid | FSW = 0.2778
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT1G05520 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.0955
| Unknown | TRANSPORT PROTEIN PUTATIVE |
AT2G44100 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1484
| Unknown | ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) RAB GDP-DISSOCIATION INHIBITOR |
AT3G20880 | Predictedtwo hybrid | FSW = 0.0177
| Unknown | ZINC FINGER (C2H2 TYPE) PROTEIN (WIP4) |
AT1G30220 | Predictedtwo hybrid | FSW = 0.0320
| Unknown | INT2 (INOSITOL TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G24470 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN |
AT4G27740 | Predictedtwo hybridtwo hybrid | FSW = 0.0205
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S YIPPEE-LIKE PROTEIN (INTERPROIPR004910) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT4G277451) HAS 684 BLAST HITS TO 682 PROTEINS IN 148 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 389 FUNGI - 132 PLANTS - 111 VIRUSES - 0 OTHER EUKARYOTES - 52 (SOURCE NCBI BLINK) |
AT2G39805 | Predictedtwo hybridtwo hybridtwo hybrid | FSW = 0.0703
| Unknown | INTEGRAL MEMBRANE YIP1 FAMILY PROTEIN |
AT3G53710 | Predictedinteraction prediction | FSW = 0.0134
| Unknown | AGD6 ARF GTPASE ACTIVATOR/ DNA BINDING / ZINC ION BINDING |
AT2G35740 | Predictedinteraction prediction | FSW = 0.1077
| Unknown | INT3 (NOSITOL TRANSPORTER 3) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454