Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G36360 - ( kelch repeat-containing protein )

11 Proteins interacs with AT2G36360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G56000

Predicted

Affinity Capture-MS

FSW = 0.0444

Unknown

HEAT SHOCK PROTEIN 81-4 (HSP81-4)
AT1G79920

Predicted

Affinity Capture-MS

FSW = 0.0664

Unknown

ATP BINDING
AT5G02490

Predicted

Affinity Capture-MS

FSW = 0.0594

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT1G80080

Predicted

Gene fusion method

FSW = 0.0672

Unknown

TMM (TOO MANY MOUTHS) PROTEIN BINDING / RECEPTOR
AT5G15020

Predicted

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.1379

Unknown

SNL2 (SIN3-LIKE 2)
AT3G04240

Predicted

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1091

Unknown

SEC (SECRET AGENT) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G21060

Predicted

Co-purification

FSW = 0.0494

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT4G02220

Predicted

in vivo

in vitro

two hybrid

FSW = 0.1233

Unknown

ZINC FINGER (MYND TYPE) FAMILY PROTEIN / PROGRAMMED CELL DEATH 2 C-TERMINAL DOMAIN-CONTAINING PROTEIN
AT4G02730

Predicted

Co-purification

Affinity Capture-MS

FSW = 0.1200

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT5G42400

Predicted

Affinity Capture-MS

FSW = 0.1667

Unknown

SDG25 (SET DOMAIN PROTEIN 25)
AT5G59160

Predicted

in vitro

FSW = 0.0229

Unknown

TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454