Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G36530 - ( LOS2 copper ion binding / phosphopyruvate hydratase )
62 Proteins interacs with AT2G36530| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G76040
   | PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSco-fractionationCo-fractionation | FSW = 0.4341
| Class C:vacuoleplasma membranenucleuscytosol | CPK29 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT4G37910
| PredictedAffinity Capture-MSpull downAffinity Capture-MS | FSW = 0.0331
| Class C:vacuole | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
| AT1G31780
| PredictedAffinity Capture-MStwo hybrid | FSW = 0.1991
| Class C:vacuole | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CONSERVED OLIGOMERIC COMPLEX COG6 (INTERPROIPR010490) HAS 281 BLAST HITS TO 279 PROTEINS IN 131 SPECIES ARCHAE - 0 BACTERIA - 2 METAZOA - 132 FUNGI - 106 PLANTS - 21 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
| AT1G73230
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2929
| Class C:plasma membranenucleus | NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX (NAC) DOMAIN-CONTAINING PROTEIN |
| AT3G55810
| PredictedAffinity Capture-MS | FSW = 0.0913
| Class C:plasma membranecytosol | PYRUVATE KINASE PUTATIVE |
| AT1G55690
| Predictedtwo hybrid | FSW = 0.0258
| Class C:plasma membranecytosol | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
| AT4G04720
| PredictedSynthetic LethalitySynthetic LethalitySynthetic Lethality | FSW = 0.0106
| Class C:plasma membrane | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
| AT5G26220
| Predictedtwo hybrid | FSW = 0.0159
| Class C:peroxisome | CHAC-LIKE FAMILY PROTEIN |
| AT1G74030
| PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0773
| Class C:nucleuscytosol | ENOLASE PUTATIVE |
| AT2G29560
| PredictedEnriched domain pairGene neighbors methodCo-expression | FSW = 0.0308
| Class C:nucleuscytosol | ENOLASE PUTATIVE |
| AT1G74710
| PredictedAffinity Capture-MS | FSW = 0.0853
| Class C:nucleus | ISOCHORISMATE SYNTHASE 1 (ICS1) / ISOCHORISMATE MUTASE |
| AT2G33800
| Predictedpull down | FSW = 0.0251
| Class C:nucleus | RIBOSOMAL PROTEIN S5 FAMILY PROTEIN |
| AT4G21010
| Predictedtwo hybrid | FSW = 0.0152
| Class C:nucleus | TRANSCRIPTION INITIATION FACTOR-RELATED |
| AT2G40290
| PredictedAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.1698
| Class C:nucleus | EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1 PUTATIVE / EIF-2A PUTATIVE / EIF-2-ALPHA PUTATIVE |
| AT4G36590
| PredictedAffinity Capture-MS | FSW = 0.3060
| Class C:nucleus | MADS-BOX PROTEIN (AGL40) |
| AT4G34430
| Predictedtwo hybridAffinity Capture-MStwo hybridtwo hybridAffinity Capture-MStwo hybridCo-purificationco-fractionationCo-fractionation | FSW = 0.1862
| Class C:nucleus | CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
| AT3G52250
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.1836
| Class C:nucleus | DNA BINDING / TRANSCRIPTION FACTOR |
| AT2G44350
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3195
| Class C:extracellular | ATCS ATP BINDING / ATP CITRATE SYNTHASE/ CITRATE (SI)-SYNTHASE |
| AT4G33720
| Predictedbiochemical | FSW = 0.0187
| Class C:extracellular | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
| AT1G56190
| Predictedpull down | FSW = 0.0925
| Unknown | PHOSPHOGLYCERATE KINASE PUTATIVE |
| AT2G04842
| Predictedpull down | FSW = 0.0652
| Unknown | EMB2761 (EMBRYO DEFECTIVE 2761) ATP BINDING / AMINOACYL-TRNA LIGASE/ LIGASE FORMING AMINOACYL-TRNA AND RELATED COMPOUNDS / NUCLEOTIDE BINDING / THREONINE-TRNA LIGASE |
| AT3G13490
| Predictedpull down | FSW = 0.0233
| Unknown | OVA5 (OVULE ABORTION 5) ATP BINDING / AMINOACYL-TRNA LIGASE/ LYSINE-TRNA LIGASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
| AT5G64050
| Predictedpull down | FSW = 0.0164
| Unknown | ERS (GLUTAMATE TRNA SYNTHETASE) GLUTAMATE-TRNA LIGASE |
| AT2G04270
| Predictedfootprinting | FSW = 0.0858
| Unknown | RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE |
| AT1G56500
| Predictedpull down | FSW = 0.0410
| Unknown | HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILY PROTEIN |
| AT5G61410
| Predictedpull down | FSW = 0.0455
| Unknown | RPE CATALYTIC/ RIBULOSE-PHOSPHATE 3-EPIMERASE |
| AT3G03710
| Predictedpull down | FSW = 0.0614
| Unknown | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| AT3G44890
| Predictedpull down | FSW = 0.1098
| Unknown | RPL9 (RIBOSOMAL PROTEIN L9) STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G23940
| PredictedAffinity Capture-MS | FSW = 0.4255
| Unknown | DEHYDRATASE FAMILY |
| AT2G22230
| Predictedpull down | FSW = 0.0652
| Unknown | BETA-HYDROXYACYL-ACP DEHYDRATASE PUTATIVE |
| AT1G03680
| Predictedtandem affinity purification | FSW = 0.0136
| Unknown | ATHM1 ENZYME ACTIVATOR |
| AT2G30390
| PredictedAffinity Capture-Western | FSW = 0.0918
| Unknown | FC2 (FERROCHELATASE 2) FERROCHELATASE |
| AT2G07675
| Predictedtwo hybridGene neighbors method | FSW = 0.0157
| Unknown | RIBOSOMAL PROTEIN S12 MITOCHONDRIAL FAMILY PROTEIN |
| AT2G05840
| Predictedbiochemical | FSW = 0.0159
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
| AT5G56710
| PredictedAffinity Capture-MS | FSW = 0.0032
| Unknown | 60S RIBOSOMAL PROTEIN L31 (RPL31C) |
| AT4G27070
| Predictedbiochemical | FSW = 0.0241
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
| AT4G26840
| PredictedAffinity Capture-MS | FSW = 0.0139
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT4G10920
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0688
| Unknown | KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR |
| AT1G80460
| Predictedcomigration in non denaturing gel electrophoresis | FSW = 0.0233
| Unknown | NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE |
| AT2G16740
| Predictedbiochemical | FSW = 0.0201
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
| AT2G34980
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2348
| Unknown | SETH1 PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE/ TRANSFERASE |
| AT1G02730
| Predictedtwo hybrid | FSW = 0.0105
| Unknown | ATCSLD5 14-BETA-D-XYLAN SYNTHASE/ CELLULOSE SYNTHASE |
| AT1G05660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3895
| Unknown | POLYGALACTURONASE PUTATIVE / PECTINASE PUTATIVE |
| AT1G15440
| PredictedAffinity Capture-MS | FSW = 0.0247
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT1G25260
| PredictedAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2310
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
| AT1G27320
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2303
| Unknown | AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE |
| AT2G32050
| Predictedtwo hybrid | FSW = 0.0095
| Unknown | CELL CYCLE CONTROL PROTEIN-RELATED |
| AT2G46070
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.2950
| Unknown | MPK12 (MITOGEN-ACTIVATED PROTEIN KINASE 12) MAP KINASE/ KINASE |
| AT3G18660
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.1955
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT4G04700
| PredictedAffinity Capture-MS | FSW = 0.0527
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT5G01640
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.4509
| Unknown | PRA1B5 (PRENYLATED RAB ACCEPTOR 1B5) |
| AT5G13010
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3453
| Unknown | EMB3011 (EMBRYO DEFECTIVE 3011) ATP BINDING / RNA HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
| AT5G13700
| PredictedAffinity Capture-Western | FSW = 0.1500
| Unknown | ATPAO1 (ARABIDOPSIS THALIANA POLYAMINE OXIDASE 1) FAD BINDING / POLYAMINE OXIDASE |
| AT5G21170
| PredictedAffinity Capture-MS | FSW = 0.0052
| Unknown | 5-AMP-ACTIVATED PROTEIN KINASE BETA-2 SUBUNIT PUTATIVE |
| AT5G25030
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.5405
| Unknown | ATP BINDING / NUCLEOTIDE BINDING / PHENYLALANINE-TRNA LIGASE |
| AT5G26250
| PredictedAffinity Capture-WesternCo-purificationAffinity Capture-MS | FSW = 0.2373
| Unknown | SUGAR TRANSPORTER PUTATIVE |
| AT5G37830
| PredictedAffinity Capture-MSAffinity Capture-MSCo-purificationCo-purificationAffinity Capture-MS | FSW = 0.3116
| Unknown | OXP1 (OXOPROLINASE 1) 5-OXOPROLINASE (ATP-HYDROLYZING)/ HYDROLASE |
| AT5G44830
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2185
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
| AT5G59850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3738
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AF) |
| AT3G12200
| Predictedbiochemical | FSW = 0.0300
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
| AT3G59790
| Predictedbiochemical | FSW = 0.0354
| Unknown | ATMPK10 MAP KINASE/ KINASE |
| AT5G13780
| PredictedAffinity Capture-MS | FSW = 0.0030
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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