Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G36880 - ( MAT3 (methionine adenosyltransferase 3) copper ion binding / methionine adenosyltransferase )
31 Proteins interacs with AT2G36880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | Predictedtwo hybrid | FSW = 0.0051
| Class C:plasma membranenucleus | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G01410 | PredictedSynthetic Lethalitysynthetic growth defectsynthetic growth defectSynthetic Lethality | FSW = 0.0349
| Class C:plasma membranenucleus | RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION |
AT1G02500 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.0395
| Class C:plasma membranenucleus | SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) METHIONINE ADENOSYLTRANSFERASE |
AT3G17390 | PredictedEnriched domain pairPhylogenetic profile method | FSW = 0.1580
| Class C:plasma membranenucleus | MTO3 (METHIONINE OVER-ACCUMULATOR 3) METHIONINE ADENOSYLTRANSFERASE |
AT2G33210 | Predictedpull down | FSW = 0.0340
| Class C:plasma membrane | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
AT5G60620 | Predictedtwo hybrid | FSW = 0.0880
| Class C:plasma membrane | PHOSPHOLIPID/GLYCEROL ACYLTRANSFERASE FAMILY PROTEIN |
AT4G01850 | PredictedEnriched domain pairPhylogenetic profile methodCo-expression | FSW = 0.2000
| Class C:nucleus | SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2) COPPER ION BINDING / METHIONINE ADENOSYLTRANSFERASE |
AT1G21720 | PredictedSynthetic Lethality | FSW = 0.0404
| Unknown | PBC1 (PROTEASOME BETA SUBUNIT C1) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G37910 | Predictedpull down | FSW = 0.0695
| Unknown | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT2G01690 | PredictedSynthetic Lethality | FSW = 0.0075
| Unknown | BINDING |
AT1G50840 | Predictedpull down | FSW = 0.0643
| Unknown | POLGAMMA2 (POLYMERASE GAMMA 2) DNA BINDING / DNA-DIRECTED DNA POLYMERASE |
AT3G10690 | Predictedpull down | FSW = 0.3175
| Unknown | DNA GYRASE SUBUNIT A FAMILY PROTEIN |
AT5G23140 | Predictedpull down | FSW = 0.1944
| Unknown | NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE |
AT4G01800 | Predictedpull down | FSW = 0.0932
| Unknown | PREPROTEIN TRANSLOCASE SECA SUBUNIT PUTATIVE |
AT3G03710 | Predictedpull down | FSW = 0.0332
| Unknown | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
AT4G08900 | Predictedpull down | FSW = 0.0256
| Unknown | ARGINASE |
AT1G79050 | Predictedpull down | FSW = 0.2105
| Unknown | DNA REPAIR PROTEIN RECA |
AT2G22360 | Predictedpull down | FSW = 0.1231
| Unknown | DNAJ HEAT SHOCK FAMILY PROTEIN |
AT5G03940 | Predictedpull down | FSW = 0.0613
| Unknown | CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT) 7S RNA BINDING / GTP BINDING / MRNA BINDING / SIGNAL SEQUENCE BINDING |
AT4G02930 | Predictedpull down | FSW = 0.1651
| Unknown | ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE |
AT3G10370 | Predictedtwo hybrid | FSW = 0.0824
| Unknown | SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
AT5G04130 | Predictedpull down | FSW = 0.1021
| Unknown | DNA TOPOISOMERASE ATP-HYDROLYZING PUTATIVE / DNA TOPOISOMERASE II PUTATIVE / DNA GYRASE PUTATIVE |
AT5G53350 | Predictedpull down | FSW = 0.1722
| Unknown | CLPX ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G79500 | Predictedpull down | FSW = 0.0693
| Unknown | 2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE / PHOSPHO-2-DEHYDRO-3-DEOXYOCTONATE ALDOLASE / 3-DEOXY-D-MANNO-OCTULOSONIC ACID 8-PHOSPHATE SYNTHETASE (KDSA) |
AT3G61740 | PredictedPhenotypic Suppression | FSW = 0.0077
| Unknown | SDG14 (SET DOMAIN PROTEIN 14) DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G09900 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | EMB2107 (EMBRYO DEFECTIVE 2107) |
AT5G26360 | Predictedtwo hybrid | FSW = 0.0386
| Unknown | CHAPERONIN PUTATIVE |
AT1G32380 | Predictedpull down | FSW = 0.0423
| Unknown | RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 2 / PHOSPHORIBOSYL DIPHOSPHATE SYNTHETASE 2 (PRS2) |
AT4G26780 | Predictedpull down | FSW = 0.1069
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT1G55810 | Predictedinterologs mapping | FSW = 0.0247
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT4G16265 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | NRPB9B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454