Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37320 - ( pentatricopeptide (PPR) repeat-containing protein )
16 Proteins interacs with AT2G37320Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G80030 | PredictedGene fusion method | FSW = 0.0564
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G37430 | PredictedGene fusion method | FSW = 0.8048
| Unknown | CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2) ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT1G06580 | PredictedGene fusion methodCo-expression | FSW = 0.9444
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT4G01030 | PredictedGene fusion methodCo-expression | FSW = 1.0000
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
AT1G02970 | PredictedGene fusion method | FSW = 0.1270
| Unknown | WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG) KINASE/ PROTEIN KINASE |
AT5G10610 | PredictedGene fusion method | FSW = 0.8667
| Unknown | CYP81K1 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G26310 | PredictedGene fusion method | FSW = 0.8667
| Unknown | CYP71B35 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G26290 | PredictedGene fusion method | FSW = 0.8276
| Unknown | CYP71B26 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G18750 | PredictedGene fusion method | FSW = 0.3048
| Unknown | WNK6 (WITH NO K (=LYSINE) 6) KINASE/ PROTEIN KINASE |
AT3G13050 | PredictedGene fusion method | FSW = 0.3048
| Unknown | TRANSPORTER-RELATED |
AT3G26300 | PredictedGene fusion method | FSW = 0.8346
| Unknown | CYP71B34 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G26200 | PredictedGene fusion method | FSW = 0.8667
| Unknown | CYP71B22 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G26320 | PredictedGene fusion method | FSW = 0.8667
| Unknown | CYP71B36 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT2G02580 | PredictedGene fusion method | FSW = 0.6900
| Unknown | CYP71B9 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT4G37340 | PredictedGene fusion method | FSW = 0.8346
| Unknown | CYP81D3 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G26330 | PredictedGene fusion method | FSW = 0.8276
| Unknown | CYP71B37 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454