Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37670 - ( WD-40 repeat family protein )
17 Proteins interacs with AT2G37670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G07810 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1823
| Unknown | ECA1 (ER-TYPE CA2+-ATPASE 1) CALCIUM-TRANSPORTING ATPASE |
AT3G26590 | PredictedAffinity Capture-MS | FSW = 0.0107
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G19830 | PredictedPhenotypic Enhancement | FSW = 0.0693
| Unknown | AMINOACYL-TRNA HYDROLASE |
AT4G04720 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0843
| Unknown | CPK21 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G41370 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic LethalityCo-purificationinterologs mapping | FSW = 0.2009
| Unknown | XPB1 (ARABIDOPSIS HOMOLOG OF XERODERMA PIGMENTOSUM COMPLEMENTATION GROUP B 1) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE/ NUCLEIC ACID BINDING |
AT2G19980 | PredictedAffinity Capture-MS | FSW = 0.1401
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT2G05170 | PredictedPhenotypic Enhancement | FSW = 0.0291
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT2G05840 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0968
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G17190 | PredictedAffinity Capture-MSSynthetic LethalityAffinity Capture-MSAffinity Capture-Western | FSW = 0.0574
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G08940 | PredictedAffinity Capture-MS | FSW = 0.0952
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT2G47760 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1600
| Unknown | ALG3 ALPHA-13-MANNOSYLTRANSFERASE/ CATALYTIC |
AT5G16040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0526
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G49560 | PredictedAffinity Capture-MS | FSW = 0.0553
| Unknown | UNKNOWN PROTEIN |
AT2G48100 | PredictedPhenotypic Enhancement | FSW = 0.0480
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G09700 | PredictedPhenotypic Enhancement | FSW = 0.1890
| Unknown | DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT5G15070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0506
| Unknown | ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT2G17140 | PredictedGene fusion method | FSW = 0.0368
| Unknown | EXPRESSED IN 7 PLANT STRUCTURES EXPRESSED DURING F MATURE EMBRYO STAGE C GLOBULAR STAGE PETAL DIFFERENTIATION AND EXPANSION STAGE D BILATERAL STAGE E EXPANDED COTYLEDON STAGE CONTAINS INTERPRO DOMAIN/S PENTATRICOPEPTIDE REPEAT (INTERPROIPR002885) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN (TAIRAT1G629101) HAS 25910 BLAST HITS TO 6027 PROTEINS IN 187 SPECIES ARCHAE - 6 BACTERIA - 20 METAZOA - 625 FUNGI - 635 PLANTS - 23410 VIRUSES - 0 OTHER EUKARYOTES - 1214 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454