Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G37760 - ( aldo/keto reductase family protein )
51 Proteins interacs with AT2G37760Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G24780 | PredictedAffinity Capture-MS | FSW = 0.4509
| Unknown | VSP1 (VEGETATIVE STORAGE PROTEIN 1) ACID PHOSPHATASE/ TRANSCRIPTION FACTOR BINDING |
AT2G29990 | PredictedAffinity Capture-MS | FSW = 0.3063
| Unknown | NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2) FAD BINDING / NADH DEHYDROGENASE/ OXIDOREDUCTASE |
AT4G26970 | PredictedAffinity Capture-MS | FSW = 0.2613
| Unknown | ACONITATE HYDRATASE/ COPPER ION BINDING |
AT5G22500 | Predictedtwo hybrid | FSW = 0.0379
| Unknown | FAR1 (FATTY ACID REDUCTASE 1) FATTY ACYL-COA REDUCTASE (ALCOHOL-FORMING)/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT1G17160 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | PFKB-TYPE CARBOHYDRATE KINASE FAMILY PROTEIN |
AT2G21540 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3006
| Unknown | SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER |
AT1G50310 | PredictedAffinity Capture-MS | FSW = 0.0490
| Unknown | STP9 (SUGAR TRANSPORTER 9) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G22120 | PredictedAffinity Capture-MS | FSW = 0.2766
| Unknown | EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED |
AT1G70490 | PredictedAffinity Capture-MSAffinity Capture-Western | FSW = 0.3003
| Unknown | ARFA1D GTP BINDING / PHOSPHOLIPASE ACTIVATOR/ PROTEIN BINDING |
AT2G37790 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.0900
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G47640 | PredictedAffinity Capture-MS | FSW = 0.1276
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN D2 PUTATIVE / SNRNP CORE PROTEIN D2 PUTATIVE / SM PROTEIN D2 PUTATIVE |
AT3G57300 | PredictedAffinity Capture-MS | FSW = 0.0056
| Unknown | INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G39795 | PredictedAffinity Capture-MS | FSW = 0.2478
| Unknown | MITOCHONDRIAL GLYCOPROTEIN FAMILY PROTEIN / MAM33 FAMILY PROTEIN |
AT3G10920 | PredictedAffinity Capture-WesternAffinity Capture-MS | FSW = 0.2884
| Unknown | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE |
AT5G57625 | PredictedAffinity Capture-MS | FSW = 0.3664
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT3G08730 | PredictedAffinity Capture-MS | FSW = 0.1396
| Unknown | PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT3G16050 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2487
| Unknown | A37 PROTEIN HETERODIMERIZATION |
AT2G05170 | PredictedAffinity Capture-MS | FSW = 0.0174
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G10280 | PredictedAffinity Capture-MS | FSW = 0.0532
| Unknown | UNKNOWN PROTEIN |
AT1G59950 | PredictedAffinity Capture-MSPhylogenetic profile methodCo-expression | FSW = 0.2818
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT1G63660 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1627
| Unknown | GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE |
AT1G78290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.4275
| Unknown | SERINE/THREONINE PROTEIN KINASE PUTATIVE |
AT2G03410 | PredictedAffinity Capture-MS | FSW = 0.2167
| Unknown | MO25 FAMILY PROTEIN |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0891
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G19910 | PredictedAffinity Capture-MS | FSW = 0.2387
| Unknown | RNA-DEPENDENT RNA POLYMERASE FAMILY PROTEIN |
AT2G34250 | PredictedAffinity Capture-MS | FSW = 0.1862
| Unknown | PROTEIN TRANSPORT PROTEIN SEC61 PUTATIVE |
AT2G43360 | PredictedAffinity Capture-Westerntwo hybridAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Westerninterologs mapping | FSW = 0.3721
| Unknown | BIO2 (BIOTIN AUXOTROPH 2) BIOTIN SYNTHASE |
AT3G59410 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2613
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G25950 | Predictedbiochemical | FSW = 0.0161
| Unknown | VATG3 (VACUOLAR ATP SYNTHASE G3) HYDROLASE ACTING ON ACID ANHYDRIDES CATALYZING TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT5G19150 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2977
| Unknown | CARBOHYDRATE KINASE FAMILY |
AT2G47570 | PredictedAffinity Capture-MS | FSW = 0.3067
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G18850 | PredictedAffinity Capture-MS | FSW = 0.2358
| Unknown | LPAT5 ACYLTRANSFERASE |
AT3G49880 | PredictedAffinity Capture-MS | FSW = 0.3537
| Unknown | GLYCOSYL HYDROLASE FAMILY PROTEIN 43 |
AT3G53730 | PredictedAffinity Capture-MS | FSW = 0.3225
| Unknown | HISTONE H4 |
AT4G19645 | PredictedAffinity Capture-MS | FSW = 0.2014
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN INTEGRAL TO MEMBRANE CONTAINS INTERPRO DOMAIN/S TRAM LAG1 AND CLN8 HOMOLOGY (INTERPROIPR006634) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G313002) HAS 401 BLAST HITS TO 401 PROTEINS IN 98 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 186 FUNGI - 102 PLANTS - 84 VIRUSES - 0 OTHER EUKARYOTES - 29 (SOURCE NCBI BLINK) |
AT4G35620 | PredictedAffinity Capture-MS | FSW = 0.2989
| Unknown | CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT5G27640 | PredictedAffinity Capture-MS | FSW = 0.3312
| Unknown | TIF3B1 (TRANSLATION INITIATION FACTOR 3B1) NUCLEIC ACID BINDING / TRANSLATION INITIATION FACTOR |
AT4G03430 | PredictedAffinity Capture-MS | FSW = 0.0228
| Unknown | EMB2770 (EMBRYO DEFECTIVE 2770) RNA SPLICING FACTOR TRANSESTERIFICATION MECHANISM |
AT2G21250 | PredictedPhenotypic EnhancementGene neighbors methodPhylogenetic profile method | FSW = 0.1110
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT2G25240 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | SERINE-TYPE ENDOPEPTIDASE INHIBITOR |
AT1G10810 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2016
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G62420 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3960
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT2G37770 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3838
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G60730 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1164
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT3G53880 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0705
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G01670 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2132
| Unknown | ALDOSE REDUCTASE PUTATIVE |
AT1G60680 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0990
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT1G60710 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1434
| Unknown | ATB2 OXIDOREDUCTASE |
AT2G21260 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.4096
| Unknown | MANNOSE 6-PHOSPHATE REDUCTASE (NADPH-DEPENDENT) PUTATIVE |
AT1G59960 | PredictedPhylogenetic profile method | FSW = 0.2389
| Unknown | ALDO/KETO REDUCTASE PUTATIVE |
AT1G65350 | PredictedGene fusion method | FSW = 0.0185
| Unknown | UBQ13 PROTEIN BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454