Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38280 - ( FAC1 (EMBRYONIC FACTOR1) AMP deaminase )

17 Proteins interacs with AT2G38280
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G01470

Experimental

co-fractionation

Co-fractionation

FSW = 0.0571

Unknown

STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING
AT3G09840

Experimental

co-fractionation

Co-fractionation

FSW = 0.0174

Unknown

CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING
AT2G01830

Experimental

pull down

two hybrid

FSW = 0.0099

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE
AT5G61290

Experimental

FSW = 0.0952

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT2G19560

Experimental

two hybrid

FSW = 0.0745

Unknown

EER5 (ENHANCED ETHYLENE RESPONSE 5)
AT5G54280

Predicted

in vivo

FSW = 0.0444

Unknown

ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) MOTOR
AT5G57015

Predicted

biochemical

FSW = 0.0175

Unknown

CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT4G08350

Predicted

Affinity Capture-MS

FSW = 0.0085

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G34210

Predicted

Affinity Capture-MS

FSW = 0.0083

Unknown

STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR
AT4G02150

Predicted

two hybrid

Co-expression

FSW = 0.1531

Unknown

MOS6 (MODIFIER OF SNC1 6) BINDING / PROTEIN TRANSPORTER
AT1G09270

Predicted

two hybrid

FSW = 0.0323

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G49900

Predicted

two hybrid

FSW = 0.1143

Unknown

ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN
AT3G08690

Predicted

two hybrid

FSW = 0.0490

Unknown

UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE
AT5G49310

Predicted

two hybrid

FSW = 0.0870

Unknown

IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER
AT5G56150

Predicted

two hybrid

two hybrid

FSW = 0.0365

Unknown

UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE
AT3G14680

Predicted

two hybrid

FSW = 0.0500

Unknown

CYP72A14 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING
AT3G20880

Predicted

two hybrid

FSW = 0.0368

Unknown

ZINC FINGER (C2H2 TYPE) PROTEIN (WIP4)

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454