Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38280 - ( FAC1 (EMBRYONIC FACTOR1) AMP deaminase )
17 Proteins interacs with AT2G38280Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G01470 | Experimentalco-fractionationCo-fractionation | FSW = 0.0571
| Unknown | STL2P (SEC12P-LIKE 2 PROTEIN) NUCLEOTIDE BINDING |
AT3G09840 | Experimentalco-fractionationCo-fractionation | FSW = 0.0174
| Unknown | CDC48 (CELL DIVISION CYCLE 48) ATPASE/ IDENTICAL PROTEIN BINDING |
AT2G01830 | Experimentalpull downtwo hybrid | FSW = 0.0099
| Unknown | WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE |
AT5G61290 | Experimental | FSW = 0.0952
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT2G19560 | Experimentaltwo hybrid | FSW = 0.0745
| Unknown | EER5 (ENHANCED ETHYLENE RESPONSE 5) |
AT5G54280 | Predictedin vivo | FSW = 0.0444
| Unknown | ATM2 (ARABIDOPSIS THALIANA MYOSIN 2) MOTOR |
AT5G57015 | Predictedbiochemical | FSW = 0.0175
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G08350 | PredictedAffinity Capture-MS | FSW = 0.0085
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MS | FSW = 0.0083
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT4G02150 | Predictedtwo hybridCo-expression | FSW = 0.1531
| Unknown | MOS6 (MODIFIER OF SNC1 6) BINDING / PROTEIN TRANSPORTER |
AT1G09270 | Predictedtwo hybrid | FSW = 0.0323
| Unknown | IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER |
AT1G49900 | Predictedtwo hybrid | FSW = 0.1143
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT3G08690 | Predictedtwo hybrid | FSW = 0.0490
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT5G49310 | Predictedtwo hybrid | FSW = 0.0870
| Unknown | IMPA-5 (IMPORTIN ALPHA ISOFORM 5) BINDING / PROTEIN TRANSPORTER |
AT5G56150 | Predictedtwo hybridtwo hybrid | FSW = 0.0365
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT3G14680 | Predictedtwo hybrid | FSW = 0.0500
| Unknown | CYP72A14 ELECTRON CARRIER/ HEME BINDING / IRON ION BINDING / MONOOXYGENASE/ OXYGEN BINDING |
AT3G20880 | Predictedtwo hybrid | FSW = 0.0368
| Unknown | ZINC FINGER (C2H2 TYPE) PROTEIN (WIP4) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454