Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT2G38600 - ( acid phosphatase class B family protein )
34 Proteins interacs with AT2G38600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G07680 | PredictedAffinity Capture-MS | FSW = 0.0090
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0441
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT2G39290 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1584
| Unknown | PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE |
AT2G29690 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3275
| Unknown | ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE |
AT2G43030 | PredictedPhenotypic Enhancement | FSW = 0.0173
| Unknown | RIBOSOMAL PROTEIN L3 FAMILY PROTEIN |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0444
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT2G14120 | PredictedAffinity Capture-MS | FSW = 0.1452
| Unknown | DYNAMIN-LIKE PROTEIN 2B (ADL2B) |
AT5G23900 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1600
| Unknown | 60S RIBOSOMAL PROTEIN L13 (RPL13D) |
AT2G32670 | PredictedPhenotypic Enhancement | FSW = 0.0684
| Unknown | ATVAMP725 |
AT4G21680 | PredictedPhenotypic Enhancement | FSW = 0.0481
| Unknown | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.0599
| Unknown | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT2G37790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1226
| Unknown | ALDO/KETO REDUCTASE FAMILY PROTEIN |
AT5G54840 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0760
| Unknown | SGP1 GTP BINDING |
AT1G09060 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4706
| Unknown | TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN |
AT5G51260 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1081
| Unknown | ACID PHOSPHATASE PUTATIVE |
AT3G45280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3912
| Unknown | SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER |
AT4G17190 | PredictedAffinity Capture-MS | FSW = 0.0559
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G15440 | PredictedAffinity Capture-MS | FSW = 0.0161
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT1G34580 | PredictedAffinity Capture-MS | FSW = 0.0855
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT1G35350 | PredictedPhenotypic Enhancement | FSW = 0.0341
| Unknown | LOCATED IN INTEGRAL TO MEMBRANE EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S EXS C-TERMINAL (INTERPROIPR004342) SPX N-TERMINAL (INTERPROIPR004331) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS EXS FAMILY PROTEIN / ERD1/XPR1/SYG1 FAMILY PROTEIN (TAIRAT1G267301) HAS 734 BLAST HITS TO 697 PROTEINS IN 158 SPECIES ARCHAE - 0 BACTERIA - 21 METAZOA - 234 FUNGI - 245 PLANTS - 125 VIRUSES - 0 OTHER EUKARYOTES - 109 (SOURCE NCBI BLINK) |
AT1G71280 | PredictedAffinity Capture-MS | FSW = 0.0395
| Unknown | DEAD/DEAH BOX HELICASE PUTATIVE |
AT2G16740 | PredictedAffinity Capture-MS | FSW = 0.0198
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G20280 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3142
| Unknown | ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN |
AT2G31260 | PredictedPhenotypic Enhancement | FSW = 0.0378
| Unknown | APG9 (AUTOPHAGY 9) |
AT2G32160 | PredictedAffinity Capture-MS | FSW = 0.0557
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S N2227-LIKE (INTERPROIPR012901) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G321701) HAS 325 BLAST HITS TO 315 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 130 PLANTS - 30 VIRUSES - 0 OTHER EUKARYOTES - 70 (SOURCE NCBI BLINK) |
AT2G24960 | PredictedPhenotypic Enhancement | FSW = 0.0507
| Unknown | UNKNOWN PROTEIN |
AT3G11230 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0946
| Unknown | YIPPEE FAMILY PROTEIN |
AT3G45240 | PredictedPhenotypic Enhancement | FSW = 0.0213
| Unknown | GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1) KINASE |
AT3G59790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1644
| Unknown | ATMPK10 MAP KINASE/ KINASE |
AT5G38030 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.0926
| Unknown | MATE EFFLUX FAMILY PROTEIN |
AT5G66360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3521
| Unknown | RIBOSOMAL RNA ADENINE DIMETHYLASE FAMILY PROTEIN |
AT2G39590 | PredictedAffinity Capture-MS | FSW = 0.0231
| Unknown | 40S RIBOSOMAL PROTEIN S15A (RPS15AC) |
AT2G47570 | PredictedPhenotypic Enhancement | FSW = 0.0338
| Unknown | 60S RIBOSOMAL PROTEIN L18 (RPL18A) |
AT3G18660 | PredictedPhenotypic Enhancement | FSW = 0.0681
| Unknown | PGSIP1 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 1) TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454